BO27252.complete Sequence
1699 bp assembled on 2011-03-14
GenBank Submission: KX797982
> BO27252.complete
GAAGTTATCAGTCGACATGCATTTTTACAAGTACATTTTACTCGGTATTT
GCGGCTTAACGGTAAGCGATGCACTTGCCGTGTACGATGCCTCCGGACGC
TTTAATCTCAGTGCCAGTTGCCCGGATTCCTTCTGCAGCTTAAGTGATCG
GCCAGTGGCATACTCTGCGACTCCGGCTCTTCAGCTCCGGGAATTGCACT
TGAGAAACTGCAGCCGGCAATCGATCACATGGCTGGTTCTGCAACTTACA
CCTGGTCTTCGCACCTTGGTTATCCGCAACTGTGCCACCTACCACATTAG
CAAGGAGAGTCTGAGGCCAGTGGAAAATCTAACCTCCCTGCAGATGCAGG
GCACTAGTCTTGGCGTCCTCCGGGATCAGATCTTTAATGCAGTGCCTCGT
TTGGAGATCCTGCAGCTAAGTCAGAACTTCATCCACACGGTTCACGTAGC
CGCCTTCCAGGGCTTATCCAAACTAAGATTACTGGGTCTGCAAGGGAATG
CGATAGCTGAAATCCTGTCTAGCACACTTGATCCTCTGATGGAGCTAGTC
CATCTGGACTTAAGCAGGAATGAGCTCACAACTTTGCCACAAAACATCTT
TGCTAAAAATAAGAAGCTACAAACCCTGTTACTCAATGGCAACCCATTGA
GAATTTTAATGCCAGATGTACTAGGCTCTCTACCCAATCTTCGACTGCTC
GACTTGGGACATGCTGCTGAATTGGAGGTGATGACGCTAAACCTTACCAA
TGTGCAGAATTTAGTTCTGGAGGGGAGTAGTCTTAGCAGTTTAGTCATCA
ACGGAGGCTTTATCAAACTGCAGGCGGGGAACAATGAGCTGAATCATCTG
CAAGTGGGAAACAAGAGCTCTGTGATTGAGATGGATTTGCATGGTAATTT
GTTGAATGGAAATGATACGGCCGCCCTTCTCAGGGGAATGTGGAATCTGC
AAAGGCTGGATCTGTCCAAAAATAGGATCGAAGCATTGCCCCAGCATGGA
AGCGGATTGGATGCTTCCGGCACCCAGGAGCTGTTGATTTTGCCCAGTTT
GAAGTTTCTGAATTTGGCGAACAATCAGTTGGTTCGCTTGCCTCCGGAGT
CGCCAATCCTCTCATCGCGTCTCAGCTATTTGGATTTGTCTCACAATCTG
ATGCTAACCCTCGATGTCGCGATACTCAGAAGCCTGTCGGTTCTGAAGGG
CCTGTACGTGGAGGGCAACCGCCTGAATACCATTAACTACCAGAAGCTCC
ATGAAGAGCACCCAGATCTCTCAGAGCTGGGGCTTCATGACAACCCCTGG
TCATCCGGCTTATACCGCAAGATGTTTCTCTACTTCACCGATAGAGGAGT
TCATCTGCAGGCGAGGCCCCAAAACCGTGTCCTAAACAAGAGTAGCCGAG
TGGACATCGATTGGCCACCGAATGAAGGCCAAGCGGAGGCTCAGAAGATG
GATCCGCCGGGAGTGACTGGCATACACCCCTACTGGACTCTTAGAGATAT
CCTTGCATTTGTTACGCTCCTGGTGGTGATGATTATTCTGCTGATGAATC
TCTACCACATCCTTGAGGAAGAGGGCTGTCTGCGAAGGTTTCGCCATTGG
AGGAGATCTCGTACCCTTGGGCAAAACACTTCAACGACCAGGAACAGTGG
CCGTCGCCTCGACGAGCAGGACTCCGAAGTAGCAAGCTTTCTAGACCAT
BO27252.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 14:36:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG18249-RC | 1668 | CG18249-PC | 1..1665 | 17..1681 | 8325 | 100 | Plus |
| CG18249-RB | 1680 | CG18249-PB | 1..1662 | 17..1678 | 8310 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:36:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG18249-RC | 2022 | CG18249-RC | 51..1717 | 15..1681 | 8335 | 100 | Plus |
| CG18249-RB | 1983 | CG18249-RB | 51..1714 | 15..1678 | 8320 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:36:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 8220196..8221862 | 15..1681 | 8335 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 14:36:22 has no hits.
BO27252.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-22 17:57:05 Download gff for
BO27252.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18249-RC | 58..1722 | 17..1683 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:38:28 Download gff for
BO27252.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18249-RC | 53..1717 | 17..1683 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:56:29 Download gff for
BO27252.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18249-RC | 53..1717 | 17..1683 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 15:56:29 Download gff for
BO27252.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 8220198..8221862 | 17..1683 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:38:28 Download gff for
BO27252.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 4045920..4047584 | 17..1683 | 99 | | Plus |
BO27252.pep Sequence
Translation from 16 to 1699
> BO27252.pep
MHFYKYILLGICGLTVSDALAVYDASGRFNLSASCPDSFCSLSDRPVAYS
ATPALQLRELHLRNCSRQSITWLVLQLTPGLRTLVIRNCATYHISKESLR
PVENLTSLQMQGTSLGVLRDQIFNAVPRLEILQLSQNFIHTVHVAAFQGL
SKLRLLGLQGNAIAEILSSTLDPLMELVHLDLSRNELTTLPQNIFAKNKK
LQTLLLNGNPLRILMPDVLGSLPNLRLLDLGHAAELEVMTLNLTNVQNLV
LEGSSLSSLVINGGFIKLQAGNNELNHLQVGNKSSVIEMDLHGNLLNGND
TAALLRGMWNLQRLDLSKNRIEALPQHGSGLDASGTQELLILPSLKFLNL
ANNQLVRLPPESPILSSRLSYLDLSHNLMLTLDVAILRSLSVLKGLYVEG
NRLNTINYQKLHEEHPDLSELGLHDNPWSSGLYRKMFLYFTDRGVHLQAR
PQNRVLNKSSRVDIDWPPNEGQAEAQKMDPPGVTGIHPYWTLRDILAFVT
LLVVMIILLMNLYHILEEEGCLRRFRHWRRSRTLGQNTSTTRNSGRRLDE
QDSEVASFLDH
BO27252.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:08:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG18249-PC | 555 | CG18249-PC | 1..555 | 1..555 | 2836 | 100 | Plus |
| CG18249-PB | 559 | CG18249-PB | 1..557 | 1..557 | 2835 | 99.6 | Plus |
| CG7800-PA | 533 | CG7800-PA | 3..493 | 14..507 | 697 | 36.3 | Plus |
| atk-PC | 1535 | CG5195-PC | 550..856 | 104..411 | 253 | 28.3 | Plus |
| atk-PB | 1535 | CG5195-PB | 550..856 | 104..411 | 253 | 28.3 | Plus |
| atk-PC | 1535 | CG5195-PC | 208..655 | 55..426 | 228 | 25.3 | Plus |
