Clone BO27270 Report

Search the DGRC for BO27270

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:272
Well:70
Vector:pDNR-Dual
Associated Gene/TranscriptCG31418-RA
Protein status:BO27270.pep: Imported from assembly
Sequenced Size:709

Clone Sequence Records

BO27270.complete Sequence

709 bp assembled on 2010-08-18

GenBank Submission: KX800095

> BO27270.complete
GAAGTTATCAGTCGACATGGAGGGGAATAGATCCCTTGTAGTGCTGGGCT
TAATACTAATTTTAATACAACTTACAACTCCAACTTCAACTCCAGCTCCA
ACTCCACAGCCTGCTGGAGCCGAAGAAGCTCCAGGAAACAGTACTGCAGA
GGCTTCCAAATCCTCCACAGCGTCTAAGTGCAAGTCAACTGAAATTCTAT
CCGAAAATGGCTGCGTGGATCGCGAAAACTTCCTCAACAAGATCGTGATG
AGATCGTGGAGGGATGAAGGCTTTGAAAAGGCGAAGGCCAGAGCTGGCCT
GGTCGATGGCGTAGAGTGCAGGGATGGGGAGTTGAGGACTGCATTTGGCT
GCTCAAAGCCACTGTACCCACCGCACGTGGACGTAAACCGGGTGCCAGTT
CACCACAGCAGACTAAATGGCGAACGGATTGTTCACGACAAGGGTATTTA
TAAACTCTATCACCACGTGGAAGATGTGGAACAAAAACCGATTCGAAAAC
CTAGAGTGGTAGGACCTCCGATAACTGGAAACAAGCGCCCACGAAAGTAC
GTATTCTTGCCGGGAAGGAGTATTGGAAAGGGACACACATGTCGGGCTAA
TGAGGTCCTGGGAAGAAGGAATCGCTGCATCCATAGGAAACGGTTAGCTG
GCCAACGACAAAATCAAACAATCGAAAACGAGCAGAGTCAAGCAAGCTTT
CTAGACCAT

BO27270.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:44:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG31418-RA 678 CG31418-PA 1..675 17..691 3360 99.9 Plus
CG31419-RB 717 CG31419-PB 175..410 176..411 625 84.3 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:44:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG31418-RA 717 CG31418-RA 20..694 17..691 3360 99.9 Plus
CG31419-RB 774 CG31419-RB 194..429 176..411 625 84.3 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:44:21
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 17283814..17284488 17..691 3360 99.9 Plus
3R 32079331 3R 17284841..17285076 176..411 625 84.3 Plus
Blast to na_te.dros performed on 2014-11-28 02:44:22 has no hits.

BO27270.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-18 15:56:38 Download gff for BO27270.complete
Subject Subject Range Query Range Percent Splice Strand
CG31418-RA 20..694 17..693 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:20:49 Download gff for BO27270.complete
Subject Subject Range Query Range Percent Splice Strand
CG31418-RA 20..694 17..693 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:17:24 Download gff for BO27270.complete
Subject Subject Range Query Range Percent Splice Strand
CG31418-RA 20..694 17..693 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:17:24 Download gff for BO27270.complete
Subject Subject Range Query Range Percent Splice Strand
3R 17283814..17284488 17..693 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:20:49 Download gff for BO27270.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 13109536..13110210 17..693 99   Plus

BO27270.pep Sequence

Translation from 16 to 709

> BO27270.pep
MEGNRSLVVLGLILILIQLTTPTSTPAPTPQPAGAEEAPGNSTAEASKSS
TASKCKSTEILSENGCVDRENFLNKIVMRSWRDEGFEKAKARAGLVDGVE
CRDGELRTAFGCSKPLYPPHVDVNRVPVHHSRLNGERIVHDKGIYKLYHH
VEDVEQKPIRKPRVVGPPITGNKRPRKYVFLPGRSIGKGHTCRANEVLGR
RNRCIHRKRLAGQRQNQTIENEQSQASFLDH

BO27270.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:25:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG31418-PA 225 CG31418-PA 1..225 1..225 1189 100 Plus
CG31419-PB 238 CG31419-PB 30..217 22..212 508 55 Plus