BO27302.complete Sequence
571 bp assembled on 2010-08-18
GenBank Submission: KX798258
> BO27302.complete
GAAGTTATCAGTCGACATGTGTTTGAAAGCACGCCATCCCAAAACGAAAC
GCGATCTGATGAACATGAAAACTTTTTGTTTATGGATAGTTCCAGTGCTG
ATCCTGCTGCAGCTGGGAATCGAGCAAGTGGAGTCCAAAAAATATCAGCG
CTGCGAACTCACAAGAGTTTTGGTGGAGAACTACAACTTCGACAAGACCT
TCATTTCCAACTGGATCTGTTTGGTGGAGCACGAAAGTTACTTGGACACC
ACCAAAGTAACGAAAAAGGGAAACGAAAGCAAGAACTATGGCCTCTTTCA
GATCAACAGCAAGGATTATTGCAGCGAAGGACGAAAAGGAGGGCAGTGCA
ATATGAAATGTGAAGACTTCTCCAATGACGACATCAGTGACGACATCGCC
TGCGCCAGAATGATCCAGGAACGCGAGGGCTTCAAATACTGGAAGGGCTG
GGATCGCTTCTGCCGCAATCCACAGAATCTGCCCAATCTCCGCGTGGCCT
GCAACCTGCGTAGCCTGTCTCCAGTGCGATCACCTCGTGGATTCTTAACG
GGCGCAAGCTTTCTAGACCAT
BO27302.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 08:58:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG16799-RB | 540 | CG16799-PB | 1..537 | 17..553 | 2685 | 100 | Plus |
CG16799-RA | 540 | CG16799-PA | 1..537 | 17..553 | 2685 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 08:58:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG16799-RB | 1288 | CG16799-RB | 91..627 | 17..553 | 2685 | 100 | Plus |
CG16799-RA | 720 | CG16799-RA | 91..627 | 17..553 | 2685 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 08:58:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 20653218..20653407 | 553..364 | 950 | 100 | Minus |
2R | 25286936 | 2R | 20653744..20653904 | 213..53 | 805 | 100 | Minus |
2R | 25286936 | 2R | 20653540..20653692 | 365..213 | 765 | 100 | Minus |
2R | 25286936 | 2R | 20654970..20655006 | 53..17 | 185 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 08:58:46 has no hits.
BO27302.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-18 15:53:33 Download gff for
BO27302.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16799-RA | 86..622 | 17..555 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:33:04 Download gff for
BO27302.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16799-RA | 91..627 | 17..555 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:28:33 Download gff for
BO27302.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16799-RA | 91..627 | 17..555 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:28:33 Download gff for
BO27302.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 20653215..20653405 | 366..555 | 98 | <- | Minus |
2R | 20653540..20653692 | 213..365 | 100 | <- | Minus |
2R | 20653745..20653903 | 54..212 | 100 | <- | Minus |
2R | 20654970..20655006 | 17..53 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:33:04 Download gff for
BO27302.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 16540720..16540910 | 366..555 | 98 | <- | Minus |
arm_2R | 16541045..16541197 | 213..365 | 100 | <- | Minus |
arm_2R | 16541250..16541408 | 54..212 | 100 | <- | Minus |
arm_2R | 16542475..16542511 | 17..53 | 100 | | Minus |
BO27302.pep Sequence
Translation from 16 to 571
> BO27302.pep
MCLKARHPKTKRDLMNMKTFCLWIVPVLILLQLGIEQVESKKYQRCELTR
VLVENYNFDKTFISNWICLVEHESYLDTTKVTKKGNESKNYGLFQINSKD
YCSEGRKGGQCNMKCEDFSNDDISDDIACARMIQEREGFKYWKGWDRFCR
NPQNLPNLRVACNLRSLSPVRSPRGFLTGASFLDH
BO27302.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:28:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG16799-PB | 179 | CG16799-PB | 1..179 | 1..179 | 980 | 100 | Plus |
CG16799-PA | 179 | CG16799-PA | 1..179 | 1..179 | 980 | 100 | Plus |
CG16756-PA | 152 | CG16756-PA | 18..152 | 27..164 | 423 | 50 | Plus |
CG11159-PA | 146 | CG11159-PA | 14..143 | 27..158 | 332 | 49.2 | Plus |
CG8492-PD | 1360 | CG8492-PD | 594..720 | 39..158 | 217 | 36.7 | Plus |