Clone BO27302 Report

Search the DGRC for BO27302

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:273
Well:2
Vector:pDNR-Dual
Associated Gene/TranscriptCG16799-RA
Protein status:BO27302.pep: Imported from assembly
Sequenced Size:571

Clone Sequence Records

BO27302.complete Sequence

571 bp assembled on 2010-08-18

GenBank Submission: KX798258

> BO27302.complete
GAAGTTATCAGTCGACATGTGTTTGAAAGCACGCCATCCCAAAACGAAAC
GCGATCTGATGAACATGAAAACTTTTTGTTTATGGATAGTTCCAGTGCTG
ATCCTGCTGCAGCTGGGAATCGAGCAAGTGGAGTCCAAAAAATATCAGCG
CTGCGAACTCACAAGAGTTTTGGTGGAGAACTACAACTTCGACAAGACCT
TCATTTCCAACTGGATCTGTTTGGTGGAGCACGAAAGTTACTTGGACACC
ACCAAAGTAACGAAAAAGGGAAACGAAAGCAAGAACTATGGCCTCTTTCA
GATCAACAGCAAGGATTATTGCAGCGAAGGACGAAAAGGAGGGCAGTGCA
ATATGAAATGTGAAGACTTCTCCAATGACGACATCAGTGACGACATCGCC
TGCGCCAGAATGATCCAGGAACGCGAGGGCTTCAAATACTGGAAGGGCTG
GGATCGCTTCTGCCGCAATCCACAGAATCTGCCCAATCTCCGCGTGGCCT
GCAACCTGCGTAGCCTGTCTCCAGTGCGATCACCTCGTGGATTCTTAACG
GGCGCAAGCTTTCTAGACCAT

BO27302.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 08:58:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG16799-RB 540 CG16799-PB 1..537 17..553 2685 100 Plus
CG16799-RA 540 CG16799-PA 1..537 17..553 2685 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 08:58:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG16799-RB 1288 CG16799-RB 91..627 17..553 2685 100 Plus
CG16799-RA 720 CG16799-RA 91..627 17..553 2685 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 08:58:45
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 20653218..20653407 553..364 950 100 Minus
2R 25286936 2R 20653744..20653904 213..53 805 100 Minus
2R 25286936 2R 20653540..20653692 365..213 765 100 Minus
2R 25286936 2R 20654970..20655006 53..17 185 100 Minus
Blast to na_te.dros performed on 2014-11-28 08:58:46 has no hits.

BO27302.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-18 15:53:33 Download gff for BO27302.complete
Subject Subject Range Query Range Percent Splice Strand
CG16799-RA 86..622 17..555 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:33:04 Download gff for BO27302.complete
Subject Subject Range Query Range Percent Splice Strand
CG16799-RA 91..627 17..555 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:28:33 Download gff for BO27302.complete
Subject Subject Range Query Range Percent Splice Strand
CG16799-RA 91..627 17..555 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:28:33 Download gff for BO27302.complete
Subject Subject Range Query Range Percent Splice Strand
2R 20653215..20653405 366..555 98 <- Minus
2R 20653540..20653692 213..365 100 <- Minus
2R 20653745..20653903 54..212 100 <- Minus
2R 20654970..20655006 17..53 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:33:04 Download gff for BO27302.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 16540720..16540910 366..555 98 <- Minus
arm_2R 16541045..16541197 213..365 100 <- Minus
arm_2R 16541250..16541408 54..212 100 <- Minus
arm_2R 16542475..16542511 17..53 100   Minus

BO27302.pep Sequence

Translation from 16 to 571

> BO27302.pep
MCLKARHPKTKRDLMNMKTFCLWIVPVLILLQLGIEQVESKKYQRCELTR
VLVENYNFDKTFISNWICLVEHESYLDTTKVTKKGNESKNYGLFQINSKD
YCSEGRKGGQCNMKCEDFSNDDISDDIACARMIQEREGFKYWKGWDRFCR
NPQNLPNLRVACNLRSLSPVRSPRGFLTGASFLDH

BO27302.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:28:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG16799-PB 179 CG16799-PB 1..179 1..179 980 100 Plus
CG16799-PA 179 CG16799-PA 1..179 1..179 980 100 Plus
CG16756-PA 152 CG16756-PA 18..152 27..164 423 50 Plus
CG11159-PA 146 CG11159-PA 14..143 27..158 332 49.2 Plus
CG8492-PD 1360 CG8492-PD 594..720 39..158 217 36.7 Plus