BO27305.complete Sequence
811 bp assembled on 2010-08-18
GenBank Submission: KX798657
> BO27305.complete
GAAGTTATCAGTCGACATGTCGTCGCCTTTGATCTGCTTGGCCATATTCC
AGCTGATTTTCCAGTTGATCCTGGCCAAGGATTATTCCTGGTGTGATCCA
GATTTATGCGGCAATGGCGTCAGACATATCGCGTGCCGAACAACTGGAAA
TTTCCACAGGCGCTGCCAACCAGATGCAGTCCAAGTGGATGTAAGCCGGC
ACAAGGCGGATTTCCTGCATGCCCACAACAAGAGGAGGAACTTCCTGGCT
CTAGGAAAAGTGCCAGGCTATTATCCTGCCGCCAGAATGGCCACAATGGT
GTGGGACGACGAGCTGCAGTACTTGTCCATGCTAAATACCCGCACCTGTA
AGTTGGACCACGATGATTGCCACAACACCTACCGGTACGCCAACTCGGGT
CAGAATCTGTGTGCCGTGTGGCGTCCACGGAGTCCACATGTGAATGTGAC
TAGCTTGGTGGAGGAGTGCCTGGGTCTCTGGTTCAACGAGTTCGATCTGA
TAGACAGCAGCTTCATCGATTCTTTTAAAGTCACGCCCATATTTGAGGAC
TACGGTCACTTTGCCGAGTTAAGTGTGGACAAAAACTTCGCCGTGGGCTG
CTCCATCATGAGATTTACTCGTCCCGACTATCCATCCGTGTATATCTACA
ACTTTATCTGCAACTATGCTTCACTCTACGCCTTGGGCGCTCCAGTTTAT
GAGACTGGACGAGCGGCCTCCCGTTGCACCACGGGCAAGAGCCACTTCTA
TCCGGGATTATGTTCCACCCGCGAGGTGTACGATCCCAATTGGGCAAGCT
TTCTAGACCAT
BO27305.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:31:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17974-RA | 780 | CG17974-PA | 1..777 | 17..793 | 3885 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:31:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17974-RA | 1033 | CG17974-RA | 144..920 | 17..793 | 3885 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:31:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 21349058..21349307 | 793..544 | 1250 | 100 | Minus |
| 2R | 25286936 | 2R | 21349367..21349612 | 543..298 | 1230 | 100 | Minus |
| 2R | 25286936 | 2R | 21349670..21349821 | 300..149 | 760 | 100 | Minus |
| 2R | 25286936 | 2R | 21350304..21350435 | 148..17 | 660 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 02:31:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| baggins | 5453 | baggins BAGGINS 5453bp | 1484..1521 | 174..211 | 109 | 76.3 | Plus |
BO27305.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-18 15:53:41 Download gff for
BO27305.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17974-RA | 410..1186 | 17..795 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:16:13 Download gff for
BO27305.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17974-RA | 144..920 | 17..795 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:13:23 Download gff for
BO27305.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17974-RA | 144..920 | 17..795 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:13:23 Download gff for
BO27305.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 21349672..21349821 | 149..298 | 100 | <- | Minus |
| 2R | 21350304..21350435 | 17..148 | 100 | | Minus |
| 2R | 21349056..21349307 | 544..795 | 99 | <- | Minus |
| 2R | 21349367..21349611 | 299..543 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:16:13 Download gff for
BO27305.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 17236561..17236812 | 544..795 | 99 | <- | Minus |
| arm_2R | 17236872..17237116 | 299..543 | 100 | <- | Minus |
| arm_2R | 17237177..17237326 | 149..298 | 100 | <- | Minus |
| arm_2R | 17237809..17237940 | 17..148 | 100 | | Minus |
BO27305.pep Sequence
Translation from 16 to 811
> BO27305.pep
MSSPLICLAIFQLIFQLILAKDYSWCDPDLCGNGVRHIACRTTGNFHRRC
QPDAVQVDVSRHKADFLHAHNKRRNFLALGKVPGYYPAARMATMVWDDEL
QYLSMLNTRTCKLDHDDCHNTYRYANSGQNLCAVWRPRSPHVNVTSLVEE
CLGLWFNEFDLIDSSFIDSFKVTPIFEDYGHFAELSVDKNFAVGCSIMRF
TRPDYPSVYIYNFICNYASLYALGAPVYETGRAASRCTTGKSHFYPGLCS
TREVYDPNWASFLDH
BO27305.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:29:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17974-PA | 259 | CG17974-PA | 1..259 | 1..259 | 1437 | 100 | Plus |
| CG9822-PA | 263 | CG9822-PA | 14..259 | 13..258 | 799 | 56.1 | Plus |
| CG32679-PA | 254 | CG32679-PA | 8..250 | 5..258 | 422 | 38.2 | Plus |
| Ag5r2-PA | 254 | CG9540-PA | 3..252 | 5..258 | 368 | 35.1 | Plus |
| CG6628-PA | 277 | CG6628-PA | 1..260 | 1..255 | 357 | 33.3 | Plus |
