Clone BO27309 Report

Search the DGRC for BO27309

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:273
Well:9
Vector:pDNR-Dual
Associated Gene/TranscriptCG7335-RA
Protein status:BO27309.pep: Imported from assembly
Sequenced Size:1150

Clone Sequence Records

BO27309.complete Sequence

1150 bp assembled on 2010-08-18

GenBank Submission: KX793967

> BO27309.complete
GAAGTTATCAGTCGACATGAAAAAGCAAATCGTAAGGGAGTTCATAACCG
TAAAGAAGGTACTTCACCTGCCGCCGGAGCCACCCCCACCGCCGCCACCT
CCTAAGCGCCACGTTCTGGCTGTGGGCAGCTGCACCCTGGACATGATCAC
CATCGTGGATCTGCCTCTTTTTCCAGGCCAGGTGCAACGCACCACGGAGG
GAAGCTGGCGGCGCGGCGGTCCCGCTGCCAATATATGCACTGTGTGGCGG
CGACTGGGCTTGGAGTGCGAATTCCTCGGAGTTTTGAGCAGGGTTAGGGC
GTTCGAGAGCCTGTTGAATGGATTTCAATCGCAGGGAATCGACATTTCGC
ATTGCCCGCTGACGAATCACCGGCCTGCGCACCGCAGCATCATTGTCCAA
CGTAACGTGGATACGCGAACCATGCTCGAGTTCGCCAATGCCAACCAGGA
GCTCACCTACCAGCAGTTTGTGGGCGCCGTGGACTACCAGAAGTACTCGT
GGATACACTTCGAATGTCGTAATCCCGTTGAGATGCTGCGCATGGTCCTG
GCGGTCATACAATTCAACGAGCGCTGCCCCGAGTCAAGGATCACACTCTC
TGTGGATCTGGACAACTTGCGACCGGCCACCATGTTGATGGCCAGTATGG
TGGACTACGTCTTCGCCCGAAAGACCATGATGCGTACGTACTGTTTTATG
AATGGACGCGAGGTTGTTTGGGCGATTAGGAATGAAATGCGAAGAGCACG
GACTCAATGGGAAAAAAGCCAGCCCAAAAAGATGCCCTATCTACCTCCTG
ATCCCCCAGATGAGCATTCCAACGGATATTGCCCGGGACCGCTGAATAAC
CAACCCGTCGTCATATACAATAATTATATGGAAGGCGCCAGTTGCCTGAT
GGCCGACGACACCTACTTCAAGGTGGGCTCCCAGATTCCGCCCAAATTAG
TGGACGTTGTGGCCGTTAACGACACCTTCTCGGCGGCCGTGATATATGCA
CTGATTAAGGTCAAGATGCGGCTGAGGGATGCCATCGAGTACGGAACCCG
GGCGTCGTCTCTGAAGTTGACGGGAAACGGATTCGATGTGCTGCGGTGTA
TGCCCAAAGATCTGATTGGTTGTTACTATACTGCAAGCTTTCTAGACCAT

BO27309.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 08:54:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG7335-RA 1119 CG7335-PA 1..1116 17..1132 5580 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 08:54:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG7335-RA 1237 CG7335-RA 11..1126 17..1132 5580 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 08:54:45
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 20132143..20133258 1132..17 5580 100 Minus
Blast to na_te.dros performed on 2014-11-28 08:54:46 has no hits.

BO27309.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-18 15:52:34 Download gff for BO27309.complete
Subject Subject Range Query Range Percent Splice Strand
CG7335-RA 11..1126 17..1134 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:31:28 Download gff for BO27309.complete
Subject Subject Range Query Range Percent Splice Strand
CG7335-RA 11..1126 17..1134 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:27:19 Download gff for BO27309.complete
Subject Subject Range Query Range Percent Splice Strand
CG7335-RA 11..1126 17..1134 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:27:19 Download gff for BO27309.complete
Subject Subject Range Query Range Percent Splice Strand
3L 20132141..20133258 17..1134 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:31:28 Download gff for BO27309.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 20125241..20126358 17..1134 99   Minus

BO27309.pep Sequence

Translation from 16 to 1150

> BO27309.pep
MKKQIVREFITVKKVLHLPPEPPPPPPPPKRHVLAVGSCTLDMITIVDLP
LFPGQVQRTTEGSWRRGGPAANICTVWRRLGLECEFLGVLSRVRAFESLL
NGFQSQGIDISHCPLTNHRPAHRSIIVQRNVDTRTMLEFANANQELTYQQ
FVGAVDYQKYSWIHFECRNPVEMLRMVLAVIQFNERCPESRITLSVDLDN
LRPATMLMASMVDYVFARKTMMRTYCFMNGREVVWAIRNEMRRARTQWEK
SQPKKMPYLPPDPPDEHSNGYCPGPLNNQPVVIYNNYMEGASCLMADDTY
FKVGSQIPPKLVDVVAVNDTFSAAVIYALIKVKMRLRDAIEYGTRASSLK
LTGNGFDVLRCMPKDLIGCYYTASFLDH

BO27309.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:20:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG7335-PA 372 CG7335-PA 1..372 1..372 1989 100 Plus
CG7328-PA 306 CG7328-PA 5..297 31..357 348 27.5 Plus
CG12289-PA 378 CG12289-PA 13..319 33..367 321 27.1 Plus
CG7551-PB 322 CG7551-PB 14..311 30..357 290 26.8 Plus