BO27310.complete Sequence
1246 bp assembled on 2010-08-18
GenBank Submission: KX799291
> BO27310.complete
GAAGTTATCAGTCGACATGTTGGCCGCTGGCAGCAGTGAGATCACTGACT
TTGGGCCACACTCGCGCCAACTAACGGCTGGCAACACGCCCAAGCGACCC
AACAAGGCCAGCAGCCACCGTCCTGGTTCTGGTTCTGGTCCTGGCCCAAT
GACAACTGGTGGCACCAGCTCAGCGAGCGGTAACGGAAACAGCGGTGGGG
CTCTGAACGCCATTCCCACGACGAAGGTCGGGAGCGGAGGAGGCGGCGGA
GGCGCCATGTCCGCCACAACGGTGACTGCGACGACGGGGAAAGCTACTGT
AAGCCATGGCCATAGTCATGGCCACGCTCTGGGGCGCAGCGAGACGAGGA
GCGGTCGGAGCGCAGCAGCTGGACGCTCCAATGTGGACGGATTCGTTGGC
GGAATCGAGACGTACTTGGGCCTCATCGGGTGGCGAAAAAAGTGCCTGTA
TACCCTGCTGCTACTGCTGATGCTGCTCATCATCACGAACCTGGTGCTCA
CCCTCTGGATACTCAAGGTGATGGAGTTCTCAACGGAGGGCATGGGGCAG
CTTAAAATCGTACCCGGTGGCATACAGCTGTCCGGACAAGCGATAATTAT
GGACATGCTGCGCGCCTCCACAATCCGTTCGCGGCACGGTCAACCCATTT
CCATAGAGTCATCACGTAACTTTTCAATCAATACACGTGATCCGAATGGC
ATGATTGAGAATCATTTATTCCTGGGACACGATAAGTTCGAGTGCCTGTC
GGCGGGATTTCGCATAAACGACACCAACGGACGCAGCCTGTTCTCCGTGA
ACCGAGATGAAGTCACCATCGGAGCACATGCCCTGCGGATCGACGGCGAA
GGTGGCGCCGTCTTCCGGGAATCCGTGCAGACGCCCCATGTGCGGGCCGA
GCCCGGCCGGGAGCTGAGACTCGAATCGCCCACACGCCAATTGGAGATGA
CGGCGGCCAAGGACATCAATTTGCAATCGCGGGCAGGAGGCATAGAAGTC
GTGGCCCTGGAAGACGTCAAGTTCCGAGCCCTCGATGGGAGCCTGCGCCT
GGAGTCCTCCAAGATACTTATGCCCAACCTGCGGACGGCCCAGCCGCCCA
TTCTGGGCACTGCCCAAAGCAGGGATCACATGCACCGCGTCTTCCAACTC
TGCGCCTGTTCCAATGGCAAGCTTTTCCTCGCTGCACCCCACTCCATATG
TGCCGGCGATGATTCCACGGTCTGCAGAGCAAGCTTTCTAGACCAT
BO27310.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:32:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Scgdelta-RE | 1215 | CG14808-PE | 1..1212 | 17..1228 | 6060 | 100 | Plus |
| Scgdelta-RD | 1215 | CG14808-PD | 1..1212 | 17..1228 | 6060 | 100 | Plus |
| Scgdelta-RC | 1215 | CG14808-PC | 1..1212 | 17..1228 | 6060 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:32:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Scgdelta-RE | 2972 | CG14808-RE | 422..1633 | 17..1228 | 6060 | 100 | Plus |
| Scgdelta-RD | 2336 | CG14808-RD | 609..1820 | 17..1228 | 6060 | 100 | Plus |
| Scgdelta-RC | 2966 | CG14808-RC | 416..1627 | 17..1228 | 6060 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:32:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 1749894..1750413 | 536..17 | 2600 | 100 | Minus |
| X | 23542271 | X | 1748032..1748302 | 918..648 | 1325 | 99.3 | Minus |
| X | 23542271 | X | 1746394..1746579 | 1228..1043 | 930 | 100 | Minus |
| X | 23542271 | X | 1746687..1746812 | 1042..917 | 630 | 100 | Minus |
| X | 23542271 | X | 1749697..1749818 | 656..535 | 610 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 02:32:11 has no hits.
BO27310.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-18 15:53:45 Download gff for
BO27310.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Scgdelta-RA | 401..1607 | 22..1230 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:16:18 Download gff for
BO27310.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Scgdelta-RA | 427..1633 | 22..1230 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:13:28 Download gff for
BO27310.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Scgdelta-RC | 421..1627 | 22..1230 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:13:28 Download gff for
BO27310.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 1746391..1746579 | 1043..1230 | 98 | <- | Minus |
| X | 1746687..1746810 | 919..1042 | 100 | <- | Minus |
| X | 1748032..1748293 | 657..918 | 100 | <- | Minus |
| X | 1749697..1749817 | 536..656 | 100 | <- | Minus |
| X | 1749895..1750408 | 22..535 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:16:18 Download gff for
BO27310.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 1640424..1640612 | 1043..1230 | 98 | <- | Minus |
| arm_X | 1640720..1640843 | 919..1042 | 100 | <- | Minus |
| arm_X | 1642065..1642326 | 657..918 | 100 | <- | Minus |
| arm_X | 1643730..1643850 | 536..656 | 100 | <- | Minus |
| arm_X | 1643928..1644441 | 22..535 | 100 | | Minus |
BO27310.pep Sequence
Translation from 16 to 1246
> BO27310.pep
MLAAGSSEITDFGPHSRQLTAGNTPKRPNKASSHRPGSGSGPGPMTTGGT
SSASGNGNSGGALNAIPTTKVGSGGGGGGAMSATTVTATTGKATVSHGHS
HGHALGRSETRSGRSAAAGRSNVDGFVGGIETYLGLIGWRKKCLYTLLLL
LMLLIITNLVLTLWILKVMEFSTEGMGQLKIVPGGIQLSGQAIIMDMLRA
STIRSRHGQPISIESSRNFSINTRDPNGMIENHLFLGHDKFECLSAGFRI
NDTNGRSLFSVNRDEVTIGAHALRIDGEGGAVFRESVQTPHVRAEPGREL
RLESPTRQLEMTAAKDINLQSRAGGIEVVALEDVKFRALDGSLRLESSKI
LMPNLRTAQPPILGTAQSRDHMHRVFQLCACSNGKLFLAAPHSICAGDDS
TVCRASFLDH
BO27310.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:29:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Scgdelta-PE | 404 | CG14808-PE | 1..404 | 1..404 | 2076 | 100 | Plus |
| Scgdelta-PD | 404 | CG14808-PD | 1..404 | 1..404 | 2076 | 100 | Plus |
| Scgdelta-PC | 404 | CG14808-PC | 1..404 | 1..404 | 2076 | 100 | Plus |
| Scgdelta-PA | 404 | CG14808-PA | 1..404 | 1..404 | 2076 | 100 | Plus |
