BO27311.complete Sequence
1180 bp assembled on 2010-08-18
GenBank Submission: KX795293
> BO27311.complete
GAAGTTATCAGTCGACATGAGTGAAGCTGCCAATCCAACGCCCTATGATT
GCCACATAGGTGCTGGTATTTACCACAGCATAGCAACGAGTTTTGCAGAA
CAAAATGTAGTTGTATCACCACTACTACTGGAAGCCACTCTGTCCCTGCT
CTTCCTGGGATCGGATGGAGCCACCGCCGAGGAGCTGCAGAAACAACTGC
GACTGAAGCAACGTTTTGCCAGCAATGCCAAAATGGCCAATTTCTATGCC
GCGGAACTGGGCAATATCACAACAGATGCAGATACCTTCCTGCAGCTGCA
GAATCGTTTGATGCTGTCATCTGAATCTGGAGTGGCCGATGATTTCCAGA
AGATTGCACAAACCTATTTCCATGCCACTGCCGAGTGTGTTGATCTGGAG
CAAACGGAGAAACTGCGTCGCCACATCAGCGAACAGATCCTGGCCAGCGT
TGGAGGCGGCAGCTGGAAGGATATTCACGTGGCAGGTGGTTCGTCAGCCA
ATACCCTGCTCCTGCTGCTGGCCGCCAATCTGCAGAGCAAGTGGTTCCTG
CCCTTCAGTGCCTACAGAACCGGACTCTATGAGTTTCACAGCGGCAGCCA
GGTGAAATCGGTGCCCATGCTCTTCGACGACGACATGTTCGTGAAGTTCG
CTGAGCTGAGGGATCTGGATGCGCGTGCCATTGAGCTGCCCTACGAGCAC
GCCGAGGAGCTGTCCATGCTGCTCATTCTGCCCAATCAGCGTGGTGGCCT
GCAGGAACTGGAGAAGCAGCTGCATGACCTGGATTTGGGTGCACTGCAGC
AGCGAATGCAGATGGAGGGCGTGCAGGTGTTGCTGCCCAAATTCAGTATC
GATTTCGAGTGCAGTCTGCGGCAGCCGTTGAAACAGCTCGGCTTTGAGGA
GATATTTGCTGCATCGGCGAACTTCAAACATCTGCATGCATCGGCGAATC
TGCCCATTGCCGATGTTCTTCAAAAGCTGCGCATAAATCTGAATGAGTCT
GGATCCGGATCCGGACCCGAGTTACCAAAGAATGCCACAGAATATAAGCC
CATTGTGATCAGCAATTCCTCCCGCCAGAAATTCTTCCGAGCTGACCATC
CATTCTTCTTCGCCATTCGCAGTGAGAATGTGACCTATCTGATGGGTCAC
GTGGTGGAATTTGCAAGCTTTCTAGACCAT
BO27311.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:32:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Spn31A-RA | 1149 | CG4804-PA | 1..1146 | 17..1162 | 5730 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:32:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Spn31A-RA | 1428 | CG4804-RA | 192..1337 | 17..1162 | 5730 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:32:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 10062572..10063441 | 17..886 | 4350 | 100 | Plus |
| 2L | 23513712 | 2L | 10063499..10063654 | 885..1040 | 780 | 100 | Plus |
| 2L | 23513712 | 2L | 10063710..10063834 | 1038..1162 | 625 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 02:32:17 has no hits.
BO27311.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-18 15:53:46 Download gff for
BO27311.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4804-RA | 111..1256 | 17..1164 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:16:21 Download gff for
BO27311.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Spn31A-RA | 192..1337 | 17..1164 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:13:31 Download gff for
BO27311.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Spn31A-RA | 192..1337 | 17..1164 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:13:31 Download gff for
BO27311.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 10062572..10063441 | 17..886 | 100 | -> | Plus |
| 2L | 10063501..10063654 | 887..1040 | 100 | -> | Plus |
| 2L | 10063713..10063834 | 1041..1164 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:16:21 Download gff for
BO27311.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 10063501..10063654 | 887..1040 | 100 | -> | Plus |
| arm_2L | 10063713..10063834 | 1041..1164 | 98 | | Plus |
| arm_2L | 10062572..10063441 | 17..886 | 100 | -> | Plus |
BO27311.pep Sequence
Translation from 16 to 1180
> BO27311.pep
MSEAANPTPYDCHIGAGIYHSIATSFAEQNVVVSPLLLEATLSLLFLGSD
GATAEELQKQLRLKQRFASNAKMANFYAAELGNITTDADTFLQLQNRLML
SSESGVADDFQKIAQTYFHATAECVDLEQTEKLRRHISEQILASVGGGSW
KDIHVAGGSSANTLLLLLAANLQSKWFLPFSAYRTGLYEFHSGSQVKSVP
MLFDDDMFVKFAELRDLDARAIELPYEHAEELSMLLILPNQRGGLQELEK
QLHDLDLGALQQRMQMEGVQVLLPKFSIDFECSLRQPLKQLGFEEIFAAS
ANFKHLHASANLPIADVLQKLRINLNESGSGSGPELPKNATEYKPIVISN
SSRQKFFRADHPFFFAIRSENVTYLMGHVVEFASFLDH
BO27311.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:29:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Spn31A-PA | 382 | CG4804-PA | 1..382 | 1..382 | 1940 | 100 | Plus |
| Spn43Aa-PA | 390 | CG12172-PA | 34..390 | 18..382 | 422 | 30.4 | Plus |
| Spn42Dc-PB | 403 | CG9455-PB | 33..375 | 30..377 | 388 | 29.7 | Plus |
| Spn42Dc-PA | 403 | CG9455-PA | 33..375 | 30..377 | 388 | 29.7 | Plus |
| Spn42De-PB | 386 | CG9460-PB | 14..383 | 11..379 | 367 | 29.8 | Plus |
