Clone BO27320 Report

Search the DGRC for BO27320

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:273
Well:20
Vector:pDNR-Dual
Associated Gene/TranscriptCG31710-RA
Protein status:BO27320.pep: Imported from assembly
Sequenced Size:400

Clone Sequence Records

BO27320.complete Sequence

400 bp assembled on 2010-08-18

GenBank Submission: KX795008

> BO27320.complete
GAAGTTATCAGTCGACATGCTCACCAGACAACCCGACTACACCATCTCCG
AGCTGGGCCATCCCATCCATCAGTGGTCGGATTCGACCGCGTGCGAGTCC
CTCAAGAAGCTGGACTACACAAAGATGCCCAGTTCTCCGCCATCACCACA
TCGCCTGCTGCCACTGAGGGAAACGTTGGACGATTGTTTCAAGCGCTTGA
CGATGAGGAGCAGAGAAGATTTCGAAGAGGATCCCGTATACCAGCAGAAA
TTGAGAAAGAATCAGTGCAATGAACAGCAGCGAAGGCGCAATCAAAAATG
TCGAGATAAAGCCCAGTCCGGAGCAACAACGACGACGACGACGACGACAA
CGATAGCGGCGAGCTGCGATTTAAACAATTTCGCAAGCTTTCTAGACCAT

BO27320.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:32:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG31710-RC 369 CG31710-PC 1..366 17..382 1830 100 Plus
CG31710-RA 369 CG31710-PA 1..366 17..382 1830 100 Plus
CG31710-RD 372 CG31710-PD 1..369 17..382 1765 99.2 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:32:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG31710-RC 795 CG31710-RC 309..674 17..382 1830 100 Plus
CG31710-RA 728 CG31710-RA 242..607 17..382 1830 100 Plus
CG31710-RD 1253 CG31710-RD 242..610 17..382 1765 99.2 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:32:42
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 9703268..9703539 288..17 1360 100 Minus
2L 23513712 2L 9703085..9703179 382..288 475 100 Minus
Blast to na_te.dros performed on 2014-11-28 02:32:43 has no hits.

BO27320.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-18 15:53:52 Download gff for BO27320.complete
Subject Subject Range Query Range Percent Splice Strand
CG31710-RA 232..597 17..384 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:16:31 Download gff for BO27320.complete
Subject Subject Range Query Range Percent Splice Strand
CG31710-RA 242..607 17..384 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:13:39 Download gff for BO27320.complete
Subject Subject Range Query Range Percent Splice Strand
CG31710-RA 242..607 17..384 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:13:39 Download gff for BO27320.complete
Subject Subject Range Query Range Percent Splice Strand
2L 9703082..9703178 289..384 97 <- Minus
2L 9703268..9703539 17..288 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:16:31 Download gff for BO27320.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 9703082..9703178 289..384 97 <- Minus
arm_2L 9703268..9703539 17..288 100   Minus

BO27320.pep Sequence

Translation from 16 to 400

> BO27320.pep
MLTRQPDYTISELGHPIHQWSDSTACESLKKLDYTKMPSSPPSPHRLLPL
RETLDDCFKRLTMRSREDFEEDPVYQQKLRKNQCNEQQRRRNQKCRDKAQ
SGATTTTTTTTTIAASCDLNNFASFLDH

BO27320.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:10:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG31710-PC 122 CG31710-PC 1..122 1..122 656 100 Plus
CG31710-PA 122 CG31710-PA 1..122 1..122 656 100 Plus
CG31710-PD 123 CG31710-PD 1..123 1..122 644 99.2 Plus