BO27323.complete Sequence
601 bp assembled on 2010-08-18
GenBank Submission: KX797780
> BO27323.complete
GAAGTTATCAGTCGACATGCTCCGGACTTTTCGTCAAATAGCCCGACTAG
GAAGATCCCTAAGGACGCCATTTCCATCTAAAAGTCTGCCTAAACTCTCA
ACCACCTTAGAGCTGCAGGCTCCTGTACACACCAGTGCTTCAGCGTGGAA
GTACGACAAGAAATCCTCACGAGCATCGGATGACTTGGACAGCGACGACG
AGGATGATGAGGATTTCAAGGACGAAAGGGACTCCAAGGTGGTCAAGACC
AAGGTGAACTCACTGCGCGCCGATCTCCTACTGAAAGCTGGCCTGGGCAT
GGCGAGAAACAAAGTGGAACTGAATTTCTACGAGAGCAAGATACGCGTCA
ATGGAAAGAAGCTGCCCAAAAAGAGTGCCCAGCTGGAAGTCGGCGATGAA
ATCGACGTAATCCGAGGCTTTAGTCAATCGAATCCTTCCCATCTGGTCGT
GGCCCGCGTCTCAATCCTCTCCGTCAGCGAGCGCGAGGAAGGACTCAGCG
TCCACCTGAGGCGCTACAAATCCCTGCTGGTCGAGAATTACCGGGGACCC
AACGCCTTCAAATCCTCAGAGCACGTTGCTCATGCAAGCTTTCTAGACCA
T
BO27323.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:32:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4884-RB | 570 | CG4884-PB | 1..567 | 17..583 | 2835 | 100 | Plus |
| CG4884-RA | 570 | CG4884-PA | 1..567 | 17..583 | 2835 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:32:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG42487-RA | 1718 | CG42487-RA | 1089..1655 | 17..583 | 2835 | 100 | Plus |
| CG4884-RB | 1718 | CG4884-RB | 1089..1655 | 17..583 | 2835 | 100 | Plus |
| CG4884-RA | 649 | CG4884-RA | 48..614 | 17..583 | 2835 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:32:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 27957807..27958099 | 309..17 | 1465 | 100 | Minus |
| 3R | 32079331 | 3R | 27957419..27957622 | 583..380 | 1020 | 100 | Minus |
| 3R | 32079331 | 3R | 27957672..27957744 | 382..310 | 365 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 02:32:53 has no hits.
BO27323.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-18 15:53:54 Download gff for
BO27323.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4884-RA | 154..720 | 17..585 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:16:35 Download gff for
BO27323.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4884-RA | 487..1053 | 17..585 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:13:43 Download gff for
BO27323.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4884-RA | 48..614 | 17..585 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:13:43 Download gff for
BO27323.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 27957417..27957619 | 383..585 | 99 | <- | Minus |
| 3R | 27957672..27957744 | 310..382 | 100 | <- | Minus |
| 3R | 27957807..27958099 | 17..309 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:16:35 Download gff for
BO27323.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 23783139..23783341 | 383..585 | 99 | <- | Minus |
| arm_3R | 23783394..23783466 | 310..382 | 100 | <- | Minus |
| arm_3R | 23783529..23783821 | 17..309 | 100 | | Minus |
BO27323.pep Sequence
Translation from 16 to 601
> BO27323.pep
MLRTFRQIARLGRSLRTPFPSKSLPKLSTTLELQAPVHTSASAWKYDKKS
SRASDDLDSDDEDDEDFKDERDSKVVKTKVNSLRADLLLKAGLGMARNKV
ELNFYESKIRVNGKKLPKKSAQLEVGDEIDVIRGFSQSNPSHLVVARVSI
LSVSEREEGLSVHLRRYKSLLVENYRGPNAFKSSEHVAHASFLDH
BO27323.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:04:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4884-PB | 189 | CG4884-PB | 1..189 | 1..189 | 945 | 100 | Plus |
| CG4884-PA | 189 | CG4884-PA | 1..189 | 1..189 | 945 | 100 | Plus |
