Clone BO27327 Report

Search the DGRC for BO27327

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:273
Well:27
Vector:pDNR-Dual
Associated Gene/TranscriptCG31345-RA
Protein status:BO27327.pep: Imported from assembly
Sequenced Size:673

Clone Sequence Records

BO27327.complete Sequence

673 bp assembled on 2010-08-18

GenBank Submission: KX794545

> BO27327.complete
GAAGTTATCAGTCGACATGCATCGCGAAAACGCCTACAGCAAGGAGGCCG
AGCTGAAGAATCTGGCCAAACGCGAGTTGGCCAACGGGTTGGACAAGGAT
CCAATTTACAAATTGCGCCTGCAGTGCTTCAGTCGCGGTGCCACCGGCAT
CTTGGGCCTGTCCAGATCATTCCGGGTGATGGACGACGATGGCAGCAAAT
CTCTCAGTCCCGAGGAGTTCAAAAAAGGAGTCACGGATATCGGCCTGGAC
CTGACTGATTCCGAAATCGATGAAATGTTCTCCAGATTCGACACAGATGG
AAGTGGCAATATTAATATGACAGAATTCCTAGTAAAGCTGCGTCCTCCTA
TGAATAATTCGCGTATCAGTATCATCGAAAAGGCCTTCGATAAGATGGAT
GCCAATGGCGATGGCCAAATTACTGTCACCGATTTGAAGAATGTATATTC
GGTGCGCGATCATCCGAAATACTTAAGTGGCGAGATGACGGAAAACCAGA
TATTCACGCAGTTCCTGAAAAACTTCGAGGTGGGTGCTCCAAATCCGGAT
GGCATCGTAACCAGGGAGGAATTTATCAACTACTATGCCACGATCAGCGC
CTCGATCGATAACGACGCTTATTTTGATCTTATGATGAGACAAGCCTACA
AACTCGCAAGCTTTCTAGACCAT

BO27327.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:33:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG31345-RA 642 CG31345-PA 1..639 17..655 3195 100 Plus
CG10126-RB 684 CG10126-PB 117..247 91..221 190 76.3 Plus
CG10126-RA 648 CG10126-PA 81..211 91..221 190 76.3 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:33:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG31345-RA 984 CG31345-RA 143..781 17..655 3195 100 Plus
CG10126-RB 835 CG10126-RB 146..276 91..221 190 76.3 Plus
CG10126-RA 907 CG10126-RA 218..348 91..221 190 76.3 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:33:03
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 12811348..12811659 655..344 1560 100 Minus
3R 32079331 3R 12813773..12813921 165..17 745 100 Minus
3R 32079331 3R 12811950..12812074 285..161 625 100 Minus
3R 32079331 3R 12811720..12811781 343..282 310 100 Minus
Blast to na_te.dros performed on 2014-11-28 02:33:04 has no hits.

BO27327.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-18 15:53:58 Download gff for BO27327.complete
Subject Subject Range Query Range Percent Splice Strand
CG31345-RA 143..781 17..657 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:16:40 Download gff for BO27327.complete
Subject Subject Range Query Range Percent Splice Strand
CG31345-RA 143..781 17..657 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:13:47 Download gff for BO27327.complete
Subject Subject Range Query Range Percent Splice Strand
CG31345-RA 143..781 17..657 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:13:47 Download gff for BO27327.complete
Subject Subject Range Query Range Percent Splice Strand
3R 12811346..12811659 344..657 99 <- Minus
3R 12811720..12811777 286..343 100 <- Minus
3R 12811950..12812069 166..285 100 <- Minus
3R 12813773..12813921 17..165 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:16:40 Download gff for BO27327.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 8637068..8637381 344..657 99 <- Minus
arm_3R 8637442..8637499 286..343 100 <- Minus
arm_3R 8637672..8637791 166..285 100 <- Minus
arm_3R 8639495..8639643 17..165 100   Minus

BO27327.pep Sequence

Translation from 16 to 673

> BO27327.pep
MHRENAYSKEAELKNLAKRELANGLDKDPIYKLRLQCFSRGATGILGLSR
SFRVMDDDGSKSLSPEEFKKGVTDIGLDLTDSEIDEMFSRFDTDGSGNIN
MTEFLVKLRPPMNNSRISIIEKAFDKMDANGDGQITVTDLKNVYSVRDHP
KYLSGEMTENQIFTQFLKNFEVGAPNPDGIVTREEFINYYATISASIDND
AYFDLMMRQAYKLASFLDH

BO27327.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:05:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG31345-PA 213 CG31345-PA 1..213 1..213 1097 100 Plus
CG10126-PA 215 CG10126-PA 9..213 7..211 713 66.3 Plus
CG10126-PB 227 CG10126-PB 21..225 7..211 713 66.3 Plus
CG11165-PA 148 CG11165-PA 15..143 51..188 140 25.2 Plus