BO27328.complete Sequence
1813 bp assembled on 2010-09-13
GenBank Submission: KX794857
> BO27328.complete
GAAGTTATCAGTCGACATGAACAGCAAGCTGCAGACCATCTCCCGATACA
TGCTCAGGCAGAAATGTGCCTTCAACTCGATGCGCAGCATTTCCACCTCG
ATGCCCAGCTTGATCAGCCATAAGCATCATATTGGTAAGGATCCCTTGGT
ATATCGCACCATTGGCCAGCAGTTGGAGCTATCTGCTTCGAATTTTGGGG
ATGTGGAGGCGATTGTCTCCTGTCACGAGGGCAAGCGGTACAGCTTCAAA
AGTTTGCTACAGGAAGCGGATGCGCTGGCGGCGGGTTTCCGGAAATTGGG
CCTGCAGCCAGGTGATGCCGTTGGTCTGTGGGCACCTAACTACTTGCACT
GGTACTTGGGCATGATGGGAGCAGCTCGAGCGGGTCTCACCTCGGTGGGT
TTGAATCCAGCTTACCAGGGACCCGAAATAGCCTACTGTCTGAATAAGGT
CAATGTGAAGGCCATCATTGCGCCGGAGACCTTCAAGACGCAGAACTACT
ATGAGATTTTGAGAGATATCTGCCCGGAAATCTCAGATGCGGATACTGGC
AAGATCCGGAGTGAGAAGTTTCCGCACCTGCGATCCGTAATCATTGATAG
CAACGATAGCCTGAAGGGTGCCCTGCGCTTCGATGACTTCCTGGACCTGG
CCAGCAAATCGGAGCGCGAAGAGGTGGCCAAAATGCAGAAGAGCATTCTG
CCCGAGTCTGCGTGCAATATTCAGTTCACATCGGGAACCACTGGCAATCC
CAAGGCTGCCTGTCTTACCCATCACAATTTCGTCAACAATGGCATCCATG
TGGGCAATCGCAACGAACTGGAGGGCGAGAGGATCTGTGTTCAGGTGCCC
ATGTTCCATGCCTTCGGTGTGATCATCTCCATCATGGCTGCTCTGACCAA
AGGTGCCACCATGGTCCTACCCGCTGCCGGTTTCAGTCCCAAGGACTCGC
TGCAAGCCATCGTCAATGAAAAGTGTTCGGTGATCCATGGCACACCAACC
ATGTATGTGGATTTGGTCAACACGCAAAAGAAGCTACAGGTGCCGCTGGG
CAGGATTAAGAAGGCCGTCACCGGAGGTGCCATTGTATCGCCGCAGCTGA
TCAAGGATGTGAGACAGGTTCTCAACGTGGAAGCGGTGCATAGTGTCTAT
GGCCTGACGGAAACCACAGCTGTGATCTTCCAATCCTTGCCCGGCGATAG
CAGTGATGTTGTCCTCAACTCAGTTGGCCATCTGACGGATCACATCGAAG
CCAAGGTGGTGGATGCCGAGGGCAGGTGTGTGCCATTTGGACAGCCCGGA
GAGCTGTGCGTCCGCGGATATACCACAATGCTGGGCTACCACGATGATGA
GGAGAAAACAAAGGAAACCATCGGTAATGATAGGTGGTTGCGCACGGGCG
ATCAGTTTGTCCTGGAGGCCAATGGATATGGACGGATTGTGGGTCGCCTA
AAGGAGATGCTCATCCGTGGCGGCGAAAATATATTCCCCAAAGAGATCGA
AGACTTTCTAAACGCCCATCCACAGGTCATTGAGGCGCATGTGATTGGAG
TGCCTGATGAGCGATTGGGTGAAGAAGTCTGCGCCTATGTTCGCCTGGAG
GAGGGCGTGGACCCCGCCTCCTTCACCGCGGAGACCTTAAAGGCCTATGC
CAAGGGCAAGCTGGCCCACTTCAAGGTGCCCAGATATGTGATCCCCATAG
ATGCATTCCCTAAAACCACCTCGGGCAAGATCCAGAAATTCAAGCTAGTG
GAGGCTTTCAAGGCCAAGGAAACAGAGCTAAAAGCTGCCAGACTAGCAAG
CTTTCTAGACCAT
BO27328.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 08:16:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12512-RA | 1782 | CG12512-PA | 1..1779 | 17..1795 | 8880 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 08:16:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12512-RA | 2054 | CG12512-RA | 180..1958 | 17..1795 | 8880 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 08:16:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 5339541..5341001 | 1544..84 | 7290 | 99.9 | Minus |
| 2L | 23513712 | 2L | 5339228..5339482 | 1795..1541 | 1275 | 100 | Minus |
| 2L | 23513712 | 2L | 5341985..5342055 | 87..17 | 355 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 08:16:29 has no hits.
BO27328.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-09-16 10:43:25 Download gff for
BO27328.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12512-RA | 295..2073 | 17..1797 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:24:29 Download gff for
BO27328.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12512-RA | 180..1958 | 17..1797 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:14:27 Download gff for
BO27328.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12512-RA | 180..1958 | 17..1797 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:14:27 Download gff for
BO27328.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 5339225..5339482 | 1541..1797 | 99 | <- | Minus |
| 2L | 5339545..5340997 | 88..1540 | 99 | <- | Minus |
| 2L | 5341985..5342055 | 17..87 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:24:29 Download gff for
BO27328.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 5339225..5339482 | 1541..1797 | 99 | <- | Minus |
| arm_2L | 5339545..5340997 | 88..1540 | 99 | <- | Minus |
| arm_2L | 5341985..5342055 | 17..87 | 100 | | Minus |
BO27328.pep Sequence
Translation from 16 to 1813
> BO27328.pep
MNSKLQTISRYMLRQKCAFNSMRSISTSMPSLISHKHHIGKDPLVYRTIG
QQLELSASNFGDVEAIVSCHEGKRYSFKSLLQEADALAAGFRKLGLQPGD
AVGLWAPNYLHWYLGMMGAARAGLTSVGLNPAYQGPEIAYCLNKVNVKAI
IAPETFKTQNYYEILRDICPEISDADTGKIRSEKFPHLRSVIIDSNDSLK
GALRFDDFLDLASKSEREEVAKMQKSILPESACNIQFTSGTTGNPKAACL
THHNFVNNGIHVGNRNELEGERICVQVPMFHAFGVIISIMAALTKGATMV
LPAAGFSPKDSLQAIVNEKCSVIHGTPTMYVDLVNTQKKLQVPLGRIKKA
VTGGAIVSPQLIKDVRQVLNVEAVHSVYGLTETTAVIFQSLPGDSSDVVL
NSVGHLTDHIEAKVVDAEGRCVPFGQPGELCVRGYTTMLGYHDDEEKTKE
TIGNDRWLRTGDQFVLEANGYGRIVGRLKEMLIRGGENIFPKEIEDFLNA
HPQVIEAHVIGVPDERLGEEVCAYVRLEEGVDPASFTAETLKAYAKGKLA
HFKVPRYVIPIDAFPKTTSGKIQKFKLVEAFKAKETELKAARLASFLDH
BO27328.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-26 14:28:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12512-PA | 593 | CG12512-PA | 1..593 | 1..593 | 3067 | 100 | Plus |
| pdgy-PC | 597 | CG9009-PC | 101..595 | 73..581 | 456 | 28.5 | Plus |
| pdgy-PB | 597 | CG9009-PB | 101..595 | 73..581 | 456 | 28.5 | Plus |
| pdgy-PD | 597 | CG9009-PD | 101..595 | 73..581 | 456 | 28.5 | Plus |
| pdgy-PA | 597 | CG9009-PA | 101..595 | 73..581 | 456 | 28.5 | Plus |
