BO27329.complete Sequence
1111 bp assembled on 2010-08-18
GenBank Submission: KX796594
> BO27329.complete
GAAGTTATCAGTCGACATGGCGCCCGTTTCAAAACGCCGTTTACCGAAAA
AATCGAATACAAATGTAAAAGTAACGAGCACACTTTCGAAAATTATAATG
CAAGGAACTGAACAGTTGTTGGACTCGGGAAATAATACAAATATTCATGT
TATTGAAAAACCCCGAATGGTGCGGTATTCAAATTCATCGCTTTACAGTG
CGTTAGCCGAGGGCCATTCCACACCGGAAATAAATATTGTGGCAAGTAAT
AGCAACGCACATGGCAAGGTAGAGCTTAATTCTGAAATCAGCGATATGTC
TATTGCATCAGTGTCGGTGAGAAATAAACCGTTTGTGAACTTTCTCCAGG
ATTTCTCCATAGCTCATGGTTCCGTACCCCGAGAAAGTATTCAGCAGGCC
ATCGTCGAGTGGGATAAACTGACAGCTGAGCAAAAACAAGAATATACTCC
TGAAAACTACGTTCTAAAATTATGTGATCAAGTGCATAATCGTGACGAAA
TTTTAAATGCAGCTACACTGCATCCGGTATATCCAATTACAACCAAAATA
CAGAATGCATTTAATGAAGCCAGTACGTCCATGAAATCTGAAAAGTATGC
GAAGAAGATCTCGTCCCCAAAAATACGTAAGACAATTAAGCGTTTAAAAC
CAAAACCACGAGTTCTGGTGACTCCCAGAAAATCAGCCAAAAATGCTGGC
AAAAAGAATATAATTTATAGTGGTTCGGCTTACAAAAACTTTCTGCGAAA
AACCGGTCAAGCCAATCCCGGTCTGATGATTGTGGAAAAGGCCTCATTAT
GGCGTAAAATGACTCCTGCCGAAAGGGATCTCTATCGGAATGTGAGCAGA
CCAAGGCGCCAGAACACCAAAGTATCCAGAGTTGACGCTCCCAAGCGCGA
AAAGAAGCGTAAAACCTCACAGTTCACCCAGATTTCAGAAAGTGATTTTT
CGGAAACTAATTTCAATATTCAGCGAGATGGCCAGCTAGAAGTTTGGAAT
GGAAGTACAAATTCCCTAGAGGAGGCAAACGGCTCCTGGTTCAAATTTGG
ATACATTGCTAAAGCACTTGGAACAGTCAAGAGTATATTTAAAGCAAGCT
TTCTAGACCAT
BO27329.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:33:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Mst33A-RB | 1080 | CG6541-PB | 1..1077 | 17..1093 | 5385 | 100 | Plus |
| Mst33A-RA | 1080 | CG6541-PA | 1..1077 | 17..1093 | 5385 | 100 | Plus |
| Mst33A-RC | 999 | CG6541-PC | 251..996 | 348..1093 | 3730 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:33:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Mst33A-RB | 1328 | CG6541-RB | 158..1234 | 17..1093 | 5385 | 100 | Plus |
| Mst33A-RA | 1342 | CG6541-RA | 172..1248 | 17..1093 | 5385 | 100 | Plus |
| Mst33A-RC | 1261 | CG6541-RC | 422..1167 | 348..1093 | 3730 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:33:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 11585527..11586603 | 1093..17 | 5385 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 02:33:09 has no hits.
BO27329.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-18 15:53:59 Download gff for
BO27329.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mst33A-RB | 12..1088 | 17..1095 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:16:43 Download gff for
BO27329.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mst33A-RA | 172..1248 | 17..1095 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:13:49 Download gff for
BO27329.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mst33A-RA | 172..1248 | 17..1095 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:13:49 Download gff for
BO27329.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 11585525..11586603 | 17..1095 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:16:43 Download gff for
BO27329.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 11585525..11586603 | 17..1095 | 99 | | Minus |
BO27329.pep Sequence
Translation from 16 to 1111
> BO27329.pep
MAPVSKRRLPKKSNTNVKVTSTLSKIIMQGTEQLLDSGNNTNIHVIEKPR
MVRYSNSSLYSALAEGHSTPEINIVASNSNAHGKVELNSEISDMSIASVS
VRNKPFVNFLQDFSIAHGSVPRESIQQAIVEWDKLTAEQKQEYTPENYVL
KLCDQVHNRDEILNAATLHPVYPITTKIQNAFNEASTSMKSEKYAKKISS
PKIRKTIKRLKPKPRVLVTPRKSAKNAGKKNIIYSGSAYKNFLRKTGQAN
PGLMIVEKASLWRKMTPAERDLYRNVSRPRRQNTKVSRVDAPKREKKRKT
SQFTQISESDFSETNFNIQRDGQLEVWNGSTNSLEEANGSWFKFGYIAKA
LGTVKSIFKASFLDH
BO27329.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:05:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Mst33A-PB | 359 | CG6541-PB | 1..359 | 1..359 | 1826 | 100 | Plus |
| Mst33A-PA | 359 | CG6541-PA | 1..359 | 1..359 | 1826 | 100 | Plus |
| Mst33A-PC | 332 | CG6541-PC | 1..332 | 1..359 | 1659 | 92.5 | Plus |
