BO27331.complete Sequence
742 bp assembled on 2010-08-18
GenBank Submission: KX796845
> BO27331.complete
GAAGTTATCAGTCGACATGGTGGATAATGAGGAAACGGGATGCCTTCAAA
GATTACTCAGCGTTGGAAAGCTACAGATTTGCAAGTTCATAATCTACTTT
GTGTGGTTGGTCAATTTCATTTTCAGCTGTGCGGATATTTACATATACTA
TTTCATACTGAAGGAACACATGCCTTGCTGGGATTGTTTGTTCAGGTCCT
ACATGATAATCGCTCTAACCGTAAATGCCCTAATGGCGCCGCTGCTGATA
GTCGGTTTTTTCTTCATATATTCGCATTTATGCCGCGAAATACGCATTTA
TGCCACAGTACTCTTCCTGGCAACATGGTTGCAGATGATGCTGACTATAC
TGTTTGCACAACAGTACCAAATTGTTGGAGATGTACTTCGAATATGGATG
AATCGCAAGAGTTTGGAATTCTACGAAAGTCGCTGCCAGTGCTGCGGAGT
TTTGGGACCTGACGACTACAAGTTGGGCGATCTGAATATCCCAAAATCCT
GTTACAAGAATGGCAGTGAAAGGGATGAGGACCTGTACCGATCAGGCTGC
TCCACGCGCTCCATAAAGCCCGCGTCGCCCATCATCCATGTGATCTCCTT
CGTAATTCAGTATGTTTTAGTCATATGCATTGAGGTATTCCTTATTATCC
TGTTAAGGAGCAAATCCCAACCCACAAGTATGTGGTCTGAGCGGGTCACC
GAAAGGTTTGGTAGTGTAAAAAAGGCAAGCTTTCTAGACCAT
BO27331.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:33:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Tsp66A-RC | 711 | CG16991-PC | 1..708 | 17..724 | 3540 | 100 | Plus |
| Tsp66A-RD | 711 | CG16991-PD | 1..708 | 17..724 | 3540 | 100 | Plus |
| Tsp66A-RE | 717 | CG16991-PE | 1..714 | 17..724 | 3445 | 99.2 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:33:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG42661-RA | 2531 | CG42661-RA | 1275..1982 | 17..724 | 3540 | 100 | Plus |
| CG42660-RA | 2531 | CG42660-RA | 1275..1982 | 17..724 | 3540 | 100 | Plus |
| Tsp66A-RC | 1308 | CG16991-RC | 52..759 | 17..724 | 3540 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:33:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 7467478..7467657 | 119..298 | 900 | 100 | Plus |
| 3L | 28110227 | 3L | 7467920..7468096 | 434..610 | 885 | 100 | Plus |
| 3L | 28110227 | 3L | 7467724..7467858 | 299..433 | 675 | 100 | Plus |
| 3L | 28110227 | 3L | 7468144..7468259 | 609..724 | 580 | 100 | Plus |
| 3L | 28110227 | 3L | 7467319..7467420 | 17..118 | 510 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 02:33:20 has no hits.
BO27331.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-18 15:54:02 Download gff for
BO27331.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tsp66A-RC | 17..724 | 17..726 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:16:48 Download gff for
BO27331.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42661-RA | 1275..1982 | 17..726 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:13:52 Download gff for
BO27331.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tsp66A-RC | 52..759 | 17..726 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:13:52 Download gff for
BO27331.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 7467319..7467420 | 17..118 | 100 | -> | Plus |
| 3L | 7467478..7467657 | 119..298 | 100 | -> | Plus |
| 3L | 7467724..7467858 | 299..433 | 100 | -> | Plus |
| 3L | 7467920..7468096 | 434..610 | 100 | -> | Plus |
| 3L | 7468146..7468259 | 611..726 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:16:48 Download gff for
BO27331.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 7460419..7460520 | 17..118 | 100 | -> | Plus |
| arm_3L | 7460578..7460757 | 119..298 | 100 | -> | Plus |
| arm_3L | 7460824..7460958 | 299..433 | 100 | -> | Plus |
| arm_3L | 7461020..7461196 | 434..610 | 100 | -> | Plus |
| arm_3L | 7461246..7461359 | 611..726 | 98 | | Plus |
BO27331.pep Sequence
Translation from 16 to 742
> BO27331.pep
MVDNEETGCLQRLLSVGKLQICKFIIYFVWLVNFIFSCADIYIYYFILKE
HMPCWDCLFRSYMIIALTVNALMAPLLIVGFFFIYSHLCREIRIYATVLF
LATWLQMMLTILFAQQYQIVGDVLRIWMNRKSLEFYESRCQCCGVLGPDD
YKLGDLNIPKSCYKNGSERDEDLYRSGCSTRSIKPASPIIHVISFVIQYV
LVICIEVFLIILLRSKSQPTSMWSERVTERFGSVKKASFLDH
BO27331.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:05:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Tsp66A-PC | 236 | CG16991-PC | 1..236 | 1..236 | 1251 | 100 | Plus |
| Tsp66A-PD | 236 | CG16991-PD | 1..236 | 1..236 | 1251 | 100 | Plus |
| Tsp66A-PE | 238 | CG16991-PE | 1..238 | 1..236 | 1238 | 99.2 | Plus |
| Tsp66A-PF | 234 | CG16991-PF | 1..234 | 1..236 | 1224 | 99.2 | Plus |
