Clone BO27335 Report

Search the DGRC for BO27335

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:273
Well:35
Vector:pDNR-Dual
Associated Gene/TranscriptMf-RA
Protein status:BO27335.pep: Imported from assembly
Sequenced Size:505

Clone Sequence Records

BO27335.complete Sequence

505 bp assembled on 2010-08-18

GenBank Submission: KX794403

> BO27335.complete
GAAGTTATCAGTCGACATGTTCAAAAACCACTTGGAAATGATTGGGCGCA
ATGAGAGCCCCAGCAAGAAGGCGAAATTCTGGCAGTCCTACATCAGGTCC
CTGAAGGGCTCCGAGGATATCCGTGCCCACGAGGCGCCCCGTGCCTCTCG
TCCCTACAGCTCCTACCTGGACTCGCCCTCCTACAGGAGCATCTATGACG
AGCCCGCCACCGCCAATGAGCGCGTCCAGTCCTCTGGCTACAGATATCTG
CCAGTGAGCCGCGACACATACGGCTACTCGCCCCGTGCCATCTACGATCA
TCACTACAGCCGAACAAAGAAGGCCTGGAATGATCATCTGAAGCGCATGC
AGGAGATCGAGCGCAGGTACCCATCTCGCTATGGTCTCTACTTGAGGGAC
AAGCCACTCACGCCCAACTCGCTGGTGCCCCTGGAGTACGAGCCAGAGGA
CAAGCTGCTGGCTGAGCTCAACAAGGCTATAAGAGTTGCAAGCTTTCTAG
ACCAT

BO27335.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:33:41
Subject Length Description Subject Range Query Range Score Percent Strand
Mf-RN 474 CG6803-PN 1..471 17..487 2340 99.8 Plus
Mf-RG 474 CG6803-PG 1..471 17..487 2340 99.8 Plus
Mf-RA 474 CG6803-PA 1..471 17..487 2340 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:33:43
Subject Length Description Subject Range Query Range Score Percent Strand
Mf-RN 814 CG6803-RN 116..586 17..487 2340 99.8 Plus
Mf-RG 879 CG6803-RG 181..651 17..487 2340 99.8 Plus
Mf-RA 813 CG6803-RA 115..585 17..487 2340 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:33:39
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 15178280..15178490 317..107 1040 99.5 Minus
3R 32079331 3R 15176184..15176295 476..365 560 100 Minus
3R 32079331 3R 15179038..15179129 108..17 460 100 Minus
3R 32079331 3R 15176362..15176412 368..318 255 100 Minus
Blast to na_te.dros performed on 2014-11-28 02:33:40 has no hits.

BO27335.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-18 15:54:06 Download gff for BO27335.complete
Subject Subject Range Query Range Percent Splice Strand
Mf-RA 120..585 22..489 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:16:57 Download gff for BO27335.complete
Subject Subject Range Query Range Percent Splice Strand
Mf-RA 120..585 22..489 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:13:59 Download gff for BO27335.complete
Subject Subject Range Query Range Percent Splice Strand
Mf-RA 120..585 22..489 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:13:59 Download gff for BO27335.complete
Subject Subject Range Query Range Percent Splice Strand
3R 15176177..15176293 367..484 97 <- Minus
3R 15176364..15176412 318..366 100 <- Minus
3R 15178280..15178489 108..317 99 <- Minus
3R 15179039..15179124 22..107 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:16:57 Download gff for BO27335.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 11001899..11002015 367..484 97 <- Minus
arm_3R 11002086..11002134 318..366 100 <- Minus
arm_3R 11004002..11004211 108..317 99 <- Minus
arm_3R 11004761..11004846 22..107 100   Minus

BO27335.pep Sequence

Translation from 16 to 505

> BO27335.pep
MFKNHLEMIGRNESPSKKAKFWQSYIRSLKGSEDIRAHEAPRASRPYSSY
LDSPSYRSIYDEPATANERVQSSGYRYLPVSRDTYGYSPRAIYDHHYSRT
KKAWNDHLKRMQEIERRYPSRYGLYLRDKPLTPNSLVPLEYEPEDKLLAE
LNKAIRVASFLDH

BO27335.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:05:47
Subject Length Description Subject Range Query Range Score Percent Strand
Mf-PN 157 CG6803-PN 1..157 1..157 835 100 Plus
Mf-PG 157 CG6803-PG 1..157 1..157 835 100 Plus
Mf-PA 157 CG6803-PA 1..157 1..157 835 100 Plus
Mf-PI 230 CG6803-PI 1..166 1..159 808 94 Plus
Mf-PE 166 CG6803-PE 1..163 1..156 802 94.5 Plus