Clone BO27340 Report

Search the DGRC for BO27340

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:273
Well:40
Vector:pDNR-Dual
Associated Gene/TranscriptCG6333-RA
Protein status:BO27340.pep: Imported from assembly
Sequenced Size:652

Clone Sequence Records

BO27340.complete Sequence

652 bp assembled on 2010-08-18

GenBank Submission: KX795051

> BO27340.complete
GAAGTTATCAGTCGACATGACCAAGGGCGTGAGGATTTGCAACGATGGAT
TGCCTGGTTTGCCGAATGAAAGGCCATATTCCCGAAGAACTTTAGATACG
CGGCAAAAGACTCAGAAGATGTCCTCCAGGCCATCTAGGAAACCATTGCA
GTCTCTACAAACTGTCGGTCGGAATACGAGTTCCAGCCTGAAGCGCATAG
GAAGTCCGATCTCCGAGGAAGAATTTGGTGTCCTGGTGCAGCAGGATTGT
AAGGCAGAGCAGCATCACACCGATCGCCAAAACCTGGCGGACATAATCCT
TATGCAGGCCCGTCGCATCGAGAAGCAGCAGCGGGAGATGAAAAGAATAA
AGGCGCACTATGAGCGCCAGGTGTCCACCATCAAGAACAATGCCATCATG
CTGGAGTCGCATCTGCAAAAGGTGCTGGCCAGTGTCGAAAGGGATCGGGC
CAAGCGGATTGGCCACCACTGCCAGGACATGCTCGGTGCCGTGGAGAAGC
TGCAAAGGAGCGACATCCAAGTGAAGCCGCAATCTTCGGCCAACCAATTG
CTGATCCAGTATCTTCACTCCAAGAAAATTTCGCATTCGACCAAGAAGTC
CAATGAAAACACAAGTAGGTACAGGAATATGTTGGCAAGCTTTCTAGACC
AT

BO27340.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:33:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG6333-RB 621 CG6333-PB 1..618 17..634 3090 100 Plus
CG6333-RA 621 CG6333-PA 1..618 17..634 3090 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:33:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG6333-RB 2133 CG6333-RB 1397..2014 17..634 3090 100 Plus
CG6333-RA 1028 CG6333-RA 296..913 17..634 3090 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:33:49
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 17480248..17480865 634..17 3090 100 Minus
Blast to na_te.dros performed on 2014-11-28 02:33:51 has no hits.

BO27340.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-18 15:54:10 Download gff for BO27340.complete
Subject Subject Range Query Range Percent Splice Strand
CG6333-RA 74..691 17..636 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:17:01 Download gff for BO27340.complete
Subject Subject Range Query Range Percent Splice Strand
CG6333-RA 296..913 17..636 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:14:03 Download gff for BO27340.complete
Subject Subject Range Query Range Percent Splice Strand
CG6333-RA 296..913 17..636 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:14:03 Download gff for BO27340.complete
Subject Subject Range Query Range Percent Splice Strand
3L 17480245..17480865 17..636 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:17:01 Download gff for BO27340.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 17473345..17473965 17..636 99   Minus

BO27340.pep Sequence

Translation from 16 to 652

> BO27340.pep
MTKGVRICNDGLPGLPNERPYSRRTLDTRQKTQKMSSRPSRKPLQSLQTV
GRNTSSSLKRIGSPISEEEFGVLVQQDCKAEQHHTDRQNLADIILMQARR
IEKQQREMKRIKAHYERQVSTIKNNAIMLESHLQKVLASVERDRAKRIGH
HCQDMLGAVEKLQRSDIQVKPQSSANQLLIQYLHSKKISHSTKKSNENTS
RYRNMLASFLDH

BO27340.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:05:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG6333-PB 206 CG6333-PB 1..206 1..206 1045 100 Plus
CG6333-PA 206 CG6333-PA 1..206 1..206 1045 100 Plus