Clone BO27342 Report

Search the DGRC for BO27342

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:273
Well:42
Vector:pDNR-Dual
Associated Gene/TranscriptCG8534-RA
Protein status:BO27342.pep: Imported from assembly
Sequenced Size:829

Clone Sequence Records

BO27342.complete Sequence

829 bp assembled on 2010-08-18

GenBank Submission: KX794026

> BO27342.complete
GAAGTTATCAGTCGACATGGCCGATTTACTCAATGGAACCCTAATCATTT
CGGAGGATCCTGTCCGCCTGCCACTCATCGGAAGTCCATGGCCATCGCTG
ACCATCGTTTCGCTCTATCTGCTGTTTGTCTTGAAGTTAGGCAGGAAGTT
CATGGAGAACAGAAAGCCCTACGATCTCCGCAGAGTCATCAGGGCATACA
ACATTATGCAGATTGTCTACAACGGCGTTATTCTGATAGCGGGTCTTCAC
TTTTTGTTCGTCCTGAAGGCCTACGACCTGCGATGCATCACCAAACTGCC
GCTGGATCACGAGCTGAAGAGCCGAGAAAGATGGTTGACCTACTCGTACT
TCTTCAACAAGTTCATGGATCTGCTGGAGACTGTGTTCTTTGTGCTGCGC
AAGAAGGATCGCCAGATATCCTTCCTGCACGTCTTCCACCACCTGGTGAT
GTCCTTTGGCGGATACCTGCACATTACCTTCAACGGCTATGGAGGCACTC
TGTTCCCATTATGCCTGCTCAATGTGGCGGTCCATGTGATCATGTACGCC
TACTACTACCTGTCCTCCGTCAGCAAGGATGTGCAGACGAGTCGGTGGAA
GAAGTACATCACCATTGTCCAGCTGGTCCAGTTCATCCTGGTGCTGGCGA
ACTTTAGCTACACCCTGATGCAGCCCGATTGCAATGCCTCCCGAACTGTG
ATATATACTGGCATGTTCATTTCCACGACCTTCATCCTGATGTTTGCCAA
CTTCTACATTCACAACTACATACTGAATGGAAGCAAACAGAAGAGCGCGT
TGAAATCCGATGCAAGCTTTCTAGACCAT

BO27342.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:33:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG8534-RA 798 CG8534-PA 1..795 17..811 3975 100 Plus
CG9458-RA 795 CG9458-PA 271..429 284..442 390 83 Plus
CG9459-RA 798 CG9459-PA 271..429 284..442 360 81.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:33:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG8534-RA 990 CG8534-RA 59..853 17..811 3975 100 Plus
CG9458-RA 900 CG9458-RA 281..439 284..442 390 83 Plus
CG9459-RA 901 CG9459-RA 300..458 284..442 360 81.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:33:55
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 9813232..9813802 241..811 2855 100 Plus
3R 32079331 3R 9812805..9813030 17..242 1130 100 Plus
3R 32079331 3R 9819375..9819533 442..284 390 83 Minus
3R 32079331 3R 9817871..9818029 442..284 360 81.8 Minus
3R 32079331 3R 9814592..9814843 386..634 355 77 Plus
3R 32079331 3R 22533152..22533236 442..358 215 83.5 Minus
3R 32079331 3R 22555518..22555601 359..442 195 82.1 Plus
Blast to na_te.dros performed on 2014-11-28 02:33:56 has no hits.

BO27342.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-18 15:54:11 Download gff for BO27342.complete
Subject Subject Range Query Range Percent Splice Strand
CG8534-RA 21..815 17..813 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:17:03 Download gff for BO27342.complete
Subject Subject Range Query Range Percent Splice Strand
CG8534-RA 59..853 17..813 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:14:04 Download gff for BO27342.complete
Subject Subject Range Query Range Percent Splice Strand
CG8534-RA 59..853 17..813 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:14:04 Download gff for BO27342.complete
Subject Subject Range Query Range Percent Splice Strand
3R 9812805..9813029 17..241 100 -> Plus
3R 9813233..9813802 242..813 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:17:03 Download gff for BO27342.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 5638527..5638751 17..241 100 -> Plus
arm_3R 5638955..5639524 242..813 99   Plus

BO27342.pep Sequence

Translation from 16 to 829

> BO27342.pep
MADLLNGTLIISEDPVRLPLIGSPWPSLTIVSLYLLFVLKLGRKFMENRK
PYDLRRVIRAYNIMQIVYNGVILIAGLHFLFVLKAYDLRCITKLPLDHEL
KSRERWLTYSYFFNKFMDLLETVFFVLRKKDRQISFLHVFHHLVMSFGGY
LHITFNGYGGTLFPLCLLNVAVHVIMYAYYYLSSVSKDVQTSRWKKYITI
VQLVQFILVLANFSYTLMQPDCNASRTVIYTGMFISTTFILMFANFYIHN
YILNGSKQKSALKSDASFLDH

BO27342.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:06:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG8534-PA 265 CG8534-PA 1..265 1..265 1377 100 Plus
eloF-PA 257 CG16905-PA 6..257 14..264 793 59.1 Plus
CG9458-PA 264 CG9458-PA 15..254 14..252 710 56.2 Plus
CG9459-PA 265 CG9459-PA 5..263 1..262 709 53.2 Plus
CG16904-PA 262 CG16904-PA 11..250 14..252 682 54.6 Plus