BO27343.complete Sequence
1594 bp assembled on 2010-08-18
GenBank Submission: KX794186
> BO27343.complete
GAAGTTATCAGTCGACATGGCGGACGACGAGCAATTCAGCTTGTGCTGGA
ACAACTTCAACACGAATTTGTCGGCCGGCTTCCACGAGTCGCTATGCCGC
GGCGACCTGGTGGACGTCTCGCTGGCCGCCGAGGGCCAAATAGTGAAGGC
CCACCGATTGGTGTTATCCGTCTGCTCGCCCTTCTTCCGCAAGATGTTCA
CTCAGATGCCGTCGAACACCCACGCTATCGTATTCCTGAACAACGTCAGC
CACTCGGCGCTGAAGGACCTCATCCAATTCATGTACTGCGGCGAGGTCAA
CGTGAAGCAGGACGCCCTGCCCGCGTTTATTAGCACCGCGGAATCGCTGC
AAATCAAGGGGCTAACGGATAACGATCCTGCGCCTCAGCCGCCGCAGGAA
TCCAGCCCGCCGCCAGCAGCACCTCATGTACAACAACAGCAAATACCGGC
TCAGCGGGTGCAGCGCCAGCAGCCTCGCGCCTCCGCCCGCTACAAGATCG
AGACCGTGGACGACGGCCTGGGCGACGAGAAACAGAGCACCACCCAGATC
GTCATCCAGACCACGGCCGCACCCCAAGCCACCATTGTACAACAGCAGCA
ACCGCAGCAGGCGGCGCAGCAGATCCAATCGCAGCAGCTGCAGACGGGAA
CCACGACGACGGCGACGCTGGTGTCGACAAACAAACGCTCTGCCCAGCGC
TCCTCCCTGACCCCCGCCTCCTCGAGCGCCGGCGTAAAGCGCTCCAAGAC
AAGCACCTCCGCAAATGTTATGGACCCTCTCGACTCGACCACTGAAACTG
GAGCCACGACAACCGCCCAACTTGTGCCGCAACAGATCACCGTGCAAACC
TCTGTGGTCTCTGCGGCAGAAGCAAAGCTCCACCAGCAATCGCCGCAGCA
GGTTCGACAGGAGGAAGCCGAGTACATTGATCTCCCCATGGAATTGCCCA
CGAAATCTGAACCTGACTACTCTGAGGACCATGGCGACGCCGCCGGCGAT
GCCGAGGGCACCTATGTGGAGGACGATACTTACGGAGACATGCGCTACGA
CGACAGCTACTTCACTGAAAACGAGGATGCTGGCAACCAGACTGCGGCAA
ATACGAGCGGTGGCGGAGTGACGGCGACCACTTCCAAGGCTGTGGTCAAG
CAACAGTCCCAGAACTACAGTGAATCATCGTTTGTCGACACCAGCGGGGA
TCAGGGCAACACAGAGGCTCAAGAATTCGATTACGGACATGGACAGTATC
GCGGTAACAATCCGCAGATTCAGTTCTCCGTGTCCAAACGTGGCGGGCAG
CTCCTGTGGCTCGATGGGATGAAGTTCTTCCGCAACAACATAAACCGCAC
GAATTTGTACTGGCGCTGCCATTGGTATTATCGGCATACCAAGTGCCCAG
TGCTAATTTGCATGAGCAAGACAAATAGCAACGACTTCCGGCAGATCCAC
GATCACTGCCACATTCGACCGAAGCGCAAAGAAAACTCTGGCACGGGAGA
CGGTCCCAAAATAAGGACTCCTGTGGTGTCCAACGTGAGGAGTCTTCCTC
AGAGCATGGCGCACATGTTCGATATGGCAAGCTTTCTAGACCAT
BO27343.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:34:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mod(mdg4)-RD | 1563 | CG32491-PD | 1..1560 | 17..1576 | 7800 | 100 | Plus |
| mod(mdg4)-RA | 1458 | CG32491-PA | 1..1209 | 17..1225 | 6045 | 100 | Plus |
| mod(mdg4)-RZ | 1524 | CG32491-PZ | 1..1209 | 17..1225 | 6045 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:34:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mod(mdg4)-RD | 1746 | CG32491-RD | 159..1718 | 17..1576 | 7800 | 100 | Plus |
| mod(mdg4)-RA | 1962 | CG32491-RA | 159..1367 | 17..1225 | 6045 | 100 | Plus |
| mod(mdg4)-RY | 1698 | CG32491-RY | 157..1365 | 17..1225 | 6045 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:34:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 21375060..21375912 | 1223..371 | 4265 | 100 | Minus |
| 3R | 32079331 | 3R | 21353382..21353736 | 1576..1222 | 1775 | 100 | Minus |
| 3R | 32079331 | 3R | 21376819..21377032 | 230..17 | 1070 | 100 | Minus |
| 3R | 32079331 | 3R | 21376602..21376742 | 370..230 | 705 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 02:34:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6698..6922 | 411..643 | 181 | 58.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2777..2883 | 560..666 | 138 | 63.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2342..2421 | 589..666 | 134 | 65 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6714..6848 | 530..663 | 130 | 59.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2321..2397 | 589..660 | 130 | 69.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6730..6809 | 589..666 | 125 | 63.7 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1078..1157 | 589..666 | 125 | 63.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1471..1602 | 528..656 | 122 | 58.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6741..6843 | 536..642 | 119 | 62 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1057..1144 | 523..610 | 115 | 63.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6751..6805 | 589..643 | 113 | 67.3 | Plus |
BO27343.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-18 15:54:12 Download gff for
BO27343.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mod(mdg4)-RD | 157..1716 | 17..1578 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:17:05 Download gff for
BO27343.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mod(mdg4)-RD | 159..1718 | 17..1578 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:14:06 Download gff for
BO27343.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mod(mdg4)-RD | 159..1718 | 17..1578 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:14:06 Download gff for
BO27343.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 21353380..21353734 | 1224..1578 | 99 | <- | Minus |
| 3R | 21375060..21375912 | 371..1223 | 100 | <- | Minus |
| 3R | 21376602..21376741 | 231..370 | 100 | <- | Minus |
| 3R | 21376819..21377032 | 17..230 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:17:05 Download gff for
BO27343.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 17179102..17179456 | 1224..1578 | 99 | <- | Minus |
| arm_3R | 17200782..17201634 | 371..1223 | 100 | <- | Minus |
| arm_3R | 17202324..17202463 | 231..370 | 100 | <- | Minus |
| arm_3R | 17202541..17202754 | 17..230 | 100 | | Minus |
BO27343.pep Sequence
Translation from 16 to 1594
> BO27343.pep
MADDEQFSLCWNNFNTNLSAGFHESLCRGDLVDVSLAAEGQIVKAHRLVL
SVCSPFFRKMFTQMPSNTHAIVFLNNVSHSALKDLIQFMYCGEVNVKQDA
LPAFISTAESLQIKGLTDNDPAPQPPQESSPPPAAPHVQQQQIPAQRVQR
QQPRASARYKIETVDDGLGDEKQSTTQIVIQTTAAPQATIVQQQQPQQAA
QQIQSQQLQTGTTTTATLVSTNKRSAQRSSLTPASSSAGVKRSKTSTSAN
VMDPLDSTTETGATTTAQLVPQQITVQTSVVSAAEAKLHQQSPQQVRQEE
AEYIDLPMELPTKSEPDYSEDHGDAAGDAEGTYVEDDTYGDMRYDDSYFT
ENEDAGNQTAANTSGGGVTATTSKAVVKQQSQNYSESSFVDTSGDQGNTE
AQEFDYGHGQYRGNNPQIQFSVSKRGGQLLWLDGMKFFRNNINRTNLYWR
CHWYYRHTKCPVLICMSKTNSNDFRQIHDHCHIRPKRKENSGTGDGPKIR
TPVVSNVRSLPQSMAHMFDMASFLDH
BO27343.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:06:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mod(mdg4)-PD | 520 | CG32491-PD | 1..520 | 1..520 | 2717 | 100 | Plus |
| mod(mdg4)-PAC | 540 | CG32491-PAC | 1..469 | 1..482 | 2130 | 88.6 | Plus |
| mod(mdg4)-PAB | 506 | CG32491-PAB | 1..477 | 1..475 | 2103 | 87.9 | Plus |
| mod(mdg4)-PA | 485 | CG32491-PA | 1..448 | 1..460 | 2100 | 91.1 | Plus |
| mod(mdg4)-PF | 536 | CG32491-PF | 1..495 | 1..493 | 2099 | 85.7 | Plus |
