BO27349.complete Sequence
1288 bp assembled on 2010-08-18
GenBank Submission: KX794970
> BO27349.complete
GAAGTTATCAGTCGACATGCAGACGCAGCAGAAACGGAAAGTTAGCAACA
GTCGAGCTTTTACCATGATTTTAATCCTGCTGCAAGTTCTTGGTATCCTT
GGCCGTGGAGTGTTGGCCCAGAAAAGCTCGCCCATTGCCAACTGGCACAT
GGCTGATCCGCACTACACAAGTGACCAGTACGCCAAAATTCTGGGCGAAG
CGGGTCTGGGCCAGGATGCCGATGACAAGGAGCACAAGGGTCTGGGTCCC
ATGCAAATCCAGTACGTGGACTACCAGCCAAACTGCCAGCCGGGCGGAGT
GCCAGTCTGTGCCACCAATGGAACCGATAGCTTCTACTTCGAGAATCATT
GCCGTTTGGAGGCGGCCAACATGAAGATGCTCTTCCAGCACGGCACAGAA
CTGGAGCCCACGGAGATGGAGCGATGCCTGCCCAACTGCCAGACGATGAA
GTGCACCCAGGTTGAGCGTCCAGTTTGCGCGCTGGCCGAGATTGGAGGAG
CTATTCCACAAACATTCGCCAACGAGTGCGAAATGCGAAAACACGAATGC
CACACGAAACAAGTCCTGAGAATCCTGCACACTGGTCCTTGTCAGACTCC
AACCAAAAGTGGGCGCAAAAAGAAGCTGCGTCGCAACAAGAAAAAGCGAC
CAACACTCAACGCCTCAATTTCAAAGTTTGCTACCATTCCGAAGAAAGTA
TACATAATGCTGGCCACTCCTGCTCCTAGGAGCAGCAGCACCACGCCCAG
GCCCTTCTTCAGCACAACCACTACCCGAATCACGACGACGGCCAGGATGA
GGCCCACCAAACCGACCAGCACAAGTCCCTCGCCCATGCGATTCCAGCAG
CTGATGAACGTGGCTAATCCCATGGTTTCCGTTTCCCAGGCTATAGATGC
CTATAATGTATACAATATACCCGATGTGGGTCACGATTACGGCGAGATAA
CCGACTCCTCGCTCTCGATGTTTTTGCCAGAAGTTGGTCGTGTCACAGAG
CCCTATTCCGTGCCCCCTAGAACCACGACCAAAACTACCAGCACCACTAG
GGCCACCACCACATCCACCACAACGCCAAAGCCAGTTTTGGCCACATCCA
GGATCATCACTCCTTTGAGCACCAGCACTATGCAATCCTTTCTGTCTGTT
CGGATGCCGAGCACTACTGAGATGGTCGAAGAATCCACAACGGAGAATCC
GGAAGCGAGTACACAAGCATTTAGCACCACTCAAAAATCCACTGCAACTG
CACAAACCAAAATACTTGAAGCAAGCTTTCTAGACCAT
BO27349.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:34:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12716-RA | 1257 | CG12716-PA | 1..1254 | 17..1270 | 6270 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:34:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12716-RA | 1359 | CG12716-RA | 1..1254 | 17..1270 | 6270 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:34:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 12974788..12975496 | 1270..562 | 3545 | 100 | Minus |
| X | 23542271 | X | 12975850..12976236 | 398..12 | 1920 | 99.7 | Minus |
| X | 23542271 | X | 12975557..12975724 | 563..396 | 840 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 02:34:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\Het-A | 6610 | Dvir\Het-A HETAVIR 6610bp | 4582..4672 | 1050..1137 | 141 | 64.8 | Plus |
BO27349.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-18 15:54:15 Download gff for
BO27349.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12716-RA | 1..1254 | 17..1272 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:17:11 Download gff for
BO27349.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12716-RA | 1..1254 | 17..1272 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:14:12 Download gff for
BO27349.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12716-RA | 1..1254 | 17..1272 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:14:12 Download gff for
BO27349.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 12974786..12975494 | 564..1272 | 99 | <- | Minus |
| X | 12975557..12975721 | 399..563 | 100 | <- | Minus |
| X | 12975850..12976231 | 17..398 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:17:11 Download gff for
BO27349.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 12869883..12870264 | 17..398 | 100 | | Minus |
| arm_X | 12868819..12869527 | 564..1272 | 99 | <- | Minus |
| arm_X | 12869590..12869754 | 399..563 | 100 | <- | Minus |
BO27349.pep Sequence
Translation from 16 to 1288
> BO27349.pep
MQTQQKRKVSNSRAFTMILILLQVLGILGRGVLAQKSSPIANWHMADPHY
TSDQYAKILGEAGLGQDADDKEHKGLGPMQIQYVDYQPNCQPGGVPVCAT
NGTDSFYFENHCRLEAANMKMLFQHGTELEPTEMERCLPNCQTMKCTQVE
RPVCALAEIGGAIPQTFANECEMRKHECHTKQVLRILHTGPCQTPTKSGR
KKKLRRNKKKRPTLNASISKFATIPKKVYIMLATPAPRSSSTTPRPFFST
TTTRITTTARMRPTKPTSTSPSPMRFQQLMNVANPMVSVSQAIDAYNVYN
IPDVGHDYGEITDSSLSMFLPEVGRVTEPYSVPPRTTTKTTSTTRATTTS
TTTPKPVLATSRIITPLSTSTMQSFLSVRMPSTTEMVEESTTENPEASTQ
AFSTTQKSTATAQTKILEASFLDH
BO27349.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:06:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12716-PA | 418 | CG12716-PA | 1..418 | 1..418 | 2178 | 100 | Plus |
| CG46026-PA | 666 | CG46026-PA | 404..621 | 212..411 | 158 | 26.5 | Plus |
