Clone BO27350 Report

Search the DGRC for BO27350

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:273
Well:50
Vector:pDNR-Dual
Associated Gene/TranscriptCG13135-RA
Protein status:BO27350.pep: Imported from assembly
Sequenced Size:430

Clone Sequence Records

BO27350.complete Sequence

430 bp assembled on 2010-08-18

GenBank Submission: KX798452

> BO27350.complete
GAAGTTATCAGTCGACATGAGGAAATCACTACTGATCGTTGGCTCCCTCC
TGGTGACCATCTTTCTGGCCCATCTGCCAGTTGGTCTAGCCGTCTCGTGT
GCCGATGATCCCACCGATACGGCTTGCATCGATTGCACAGATACCGCGAA
TGCAGCTGAAGCCGATTGTACCACAACCACGGCTGCTCCGGAGGTAACCA
CAGCTGCCGCAGAGGTAACCACAGCGGCCAGTGCCGATGGAGAAACCACC
ACCGCAGCCGCTTCGGCCACCGACACGACCACCGCCTCATCCGGAGGCAG
TGGCAAGAAGCGCGTGAGGAGGACCTTCAGGCGTAAGGTGAGCCGCCCCA
GGAAGATCAAGAAGAGGAGGAGCAACCGAGGCAGGAACAATAGGAGGAGC
CAAAACTCGGGCGCAAGCTTTCTAGACCAT

BO27350.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:34:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG13135-RC 399 CG13135-PC 1..396 17..412 1980 100 Plus
CG13135-RA 399 CG13135-PA 1..396 17..412 1980 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:34:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG13135-RC 643 CG13135-RC 31..428 15..412 1990 100 Plus
CG13135-RA 576 CG13135-RA 31..428 15..412 1990 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:34:25
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 10122344..10122741 412..15 1990 100 Minus
Blast to na_te.dros performed on 2014-11-28 02:34:27 has no hits.

BO27350.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-18 15:54:16 Download gff for BO27350.complete
Subject Subject Range Query Range Percent Splice Strand
CG13135-RA 33..428 17..414 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:17:13 Download gff for BO27350.complete
Subject Subject Range Query Range Percent Splice Strand
CG13135-RA 33..428 17..414 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:14:14 Download gff for BO27350.complete
Subject Subject Range Query Range Percent Splice Strand
CG13135-RA 33..428 17..414 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:14:14 Download gff for BO27350.complete
Subject Subject Range Query Range Percent Splice Strand
2L 10122342..10122739 17..414 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:17:13 Download gff for BO27350.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 10122342..10122739 17..414 99   Minus

BO27350.pep Sequence

Translation from 16 to 430

> BO27350.pep
MRKSLLIVGSLLVTIFLAHLPVGLAVSCADDPTDTACIDCTDTANAAEAD
CTTTTAAPEVTTAAAEVTTAASADGETTTAAASATDTTTASSGGSGKKRV
RRTFRRKVSRPRKIKKRRSNRGRNNRRSQNSGASFLDH

BO27350.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:06:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG13135-PC 132 CG13135-PC 1..132 1..132 658 100 Plus
CG13135-PA 132 CG13135-PA 1..132 1..132 658 100 Plus
ng2-PA 112 CG14266-PA 14..107 38..130 167 43.8 Plus
ng1-PA 107 CG10781-PA 14..105 38..128 166 44.7 Plus
CG8087-PA 142 CG8087-PA 23..126 25..131 158 36.6 Plus