BO27359.complete Sequence
1135 bp assembled on 2010-08-18
GenBank Submission: KX798146
> BO27359.complete
GAAGTTATCAGTCGACATGGCTGCTATTGCCGCCCTGCCAACAACAACGT
TGCGGCGCAACAACAACAACAACACCAAAGGGATCAAATCCCGTCGCAAT
GAGCGTAACATCCTGACATTCTACGAAAAGATTGCCGTAATCCGTTACTA
TGACGAGACCAACATCTCTAGGAACAGTCTGGCCAAGATGTTCCACTGCT
GCGCCACCCAAATACGTAGAATCTTGGATAAGAAAAAGGATCTGCTGCAG
CAGTTGGCCACCTTAAGCGAGGCAGATGCCTCCATTATAATCGAAGAGAT
GACGCGCAAGCGCCGCAAGTTCGAAATGAGTGCCATCAGCTTCCTACTAC
ACGAGTGGGTGGAAAGGTGCATCCAAATGCAGTTGAACATCAGCATAAGG
AACCAAAAACTGAAGGAAACCGCCATCCGGATGGCAGCTGTGTTGAACCT
GCCATCCTTCAGACCATCCTATCGATGGCTAAGCCGATTCCGCAACAAGT
ACAAGTACGAGGCCGATGAATTGGGCTACCAGGGCGAAAATCCCTTGAAC
CAGGACCTGCCTGTCGAAGACATCATTGTGGAGTTTAAGCATGCACTGCC
GAACTTCATGCAACGGGAGCTGGATAATCCAGGCGAAGCAATCTCAAAAG
CAGCTGTTATGGCAGATTTTGTCAATCTCTCCAGCGAAAACAGTATCATG
TCCGATCATCCAGAGGGGGATAATGAAGTGGAGCTGGTAACATGTGAGCC
CACCATGATGTCCTCACCATCCAGCACACCAGATGCTGCAGAGGGGGAAA
TACCTCTGCAGGCACATGGCGACCAGGAAAACCCGGATGATCAGATTAAC
GCTGGAACCAGTACTCTTCTGAATGGGGTTTTTCCGCATCTAGCCATTAT
CCACCAGTTCGCTCTGATGAACTCGGATGTACAGGCATTGGAACTTATCT
CCCAGCTGGGAGTGCACATGCAGCAACAGGCTGTTTCTGGAGCTTATCAT
AACCTGTCGCTGGCGACTACCGATGGAGATGGGCAAGACGATCCAGGAGA
AATCGCTCTTTCGGAACTGCCACCGGGAAGTATTTACGCCGATATCGATG
ACATCGAATTGATCGAGGCAAGCTTTCTAGACCAT
BO27359.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:35:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ebd2-RB | 1104 | CG12972-PB | 1..1101 | 17..1117 | 5505 | 100 | Plus |
| ebd2-RA | 1104 | CG12972-PA | 1..1101 | 17..1117 | 5505 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:35:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ebd2-RB | 1821 | CG12972-RB | 448..1548 | 17..1117 | 5505 | 100 | Plus |
| ebd2-RA | 1606 | CG12972-RA | 233..1333 | 17..1117 | 5505 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:35:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 21345041..21346076 | 1117..82 | 5180 | 100 | Minus |
| 3L | 28110227 | 3L | 21346689..21346754 | 82..17 | 330 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 02:35:07 has no hits.
BO27359.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-18 15:54:25 Download gff for
BO27359.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12972-RA | 1..1101 | 17..1119 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:17:26 Download gff for
BO27359.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ebd2-RA | 233..1333 | 17..1119 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:14:27 Download gff for
BO27359.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ebd2-RA | 233..1333 | 17..1119 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:14:27 Download gff for
BO27359.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 21345039..21346075 | 83..1119 | 99 | <- | Minus |
| 3L | 21346689..21346754 | 17..82 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:17:26 Download gff for
BO27359.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 21338139..21339175 | 83..1119 | 99 | <- | Minus |
| arm_3L | 21339789..21339854 | 17..82 | 100 | | Minus |
BO27359.pep Sequence
Translation from 16 to 1135
> BO27359.pep
MAAIAALPTTTLRRNNNNNTKGIKSRRNERNILTFYEKIAVIRYYDETNI
SRNSLAKMFHCCATQIRRILDKKKDLLQQLATLSEADASIIIEEMTRKRR
KFEMSAISFLLHEWVERCIQMQLNISIRNQKLKETAIRMAAVLNLPSFRP
SYRWLSRFRNKYKYEADELGYQGENPLNQDLPVEDIIVEFKHALPNFMQR
ELDNPGEAISKAAVMADFVNLSSENSIMSDHPEGDNEVELVTCEPTMMSS
PSSTPDAAEGEIPLQAHGDQENPDDQINAGTSTLLNGVFPHLAIIHQFAL
MNSDVQALELISQLGVHMQQQAVSGAYHNLSLATTDGDGQDDPGEIALSE
LPPGSIYADIDDIELIEASFLDH
BO27359.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:07:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ebd2-PB | 367 | CG12972-PB | 1..367 | 1..367 | 1878 | 100 | Plus |
| ebd2-PA | 367 | CG12972-PA | 1..367 | 1..367 | 1878 | 100 | Plus |
