Clone BO27369 Report

Search the DGRC for BO27369

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:273
Well:69
Vector:pDNR-Dual
Associated Gene/TranscriptCG34246-RA
Protein status:BO27369.pep: Imported from assembly
Sequenced Size:754

Clone Sequence Records

BO27369.complete Sequence

754 bp assembled on 2010-08-18

GenBank Submission: KX794416

> BO27369.complete
GAAGTTATCAGTCGACATGAGTAGAGTTATTAATGGCTTTAAAAGTGCTG
TAAAAGCTACAAATTATACACCGCTTGTTAGAAATGCAGCACAATTTAAT
CAATTCCAGTTGCCAGAAATACGGAAATTTTCAGTTGAATCTTCGCCGGC
TTGTTGGAATTGCCAAAAGAAATCGGAATTAAAGCAGAATATGATATGTT
CGGACTGTGGACACTTGCAGGATGTTAACTCAGGAATAAATTACTTTAAA
CTGCTCAGCTTTCCCATTCAATTTTCTTTGGAGTCCCAGAAGTTGACAAG
AAGTTTTCGCCAGTTGCAGACCATTGTGCATCCCGATAAATATAGTAATA
AAACCTCACGGGAGCAAACAAACTCCTCAGACTGGAGTTCCCTCATCAAC
AAGGCATATAAAACGCTTTCCACGCCCATAGATCGTGGTCAGTACCTTCT
TCAACTGGAGGGCGAACAGATGCCGCAGGATAATAGCGCTCTTAACAAAG
AGTTTCTCATGGCCATGATGGAGCGGAACGAGGAGGTGGAGGATGCGGAA
GACACCCAAACGCTGGAGAATTTAAATATTCAGCTCATCAAGGAACTGGA
GGAGATGGCCCGGAAGTTAAATGCCCTTTTCGATAGCAAAGATCTTTCGG
GAGTCAAAGAAACCCTCGTAGAGATGAAGTACCTGCTGAGTATTCAGAAC
AGCATTAAACAGAAGCAACAAAGTTTGCTGGGCAGCGCAAGCTTTCTAGA
CCAT

BO27369.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:35:55
Subject Length Description Subject Range Query Range Score Percent Strand
Hsc20-RA 723 CG34246-PA 1..720 17..736 3600 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:35:56
Subject Length Description Subject Range Query Range Score Percent Strand
Hsc20-RA 927 CG34246-RA 70..789 17..736 3600 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:35:52
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 16233643..16234027 352..736 1925 100 Plus
3L 28110227 3L 16233196..16233417 17..238 1110 100 Plus
3L 28110227 3L 16233470..16233582 239..351 565 100 Plus
Blast to na_te.dros performed on 2014-11-28 02:35:54 has no hits.

BO27369.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-18 15:54:35 Download gff for BO27369.complete
Subject Subject Range Query Range Percent Splice Strand
CG34246-RA 77..796 17..738 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:17:44 Download gff for BO27369.complete
Subject Subject Range Query Range Percent Splice Strand
Hsc20-RA 70..789 17..738 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:14:40 Download gff for BO27369.complete
Subject Subject Range Query Range Percent Splice Strand
Hsc20-RA 70..789 17..738 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:14:40 Download gff for BO27369.complete
Subject Subject Range Query Range Percent Splice Strand
3L 16233196..16233417 17..238 100 -> Plus
3L 16233470..16233582 239..351 100 -> Plus
3L 16233643..16234027 352..738 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:17:44 Download gff for BO27369.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 16226570..16226682 239..351 100 -> Plus
arm_3L 16226296..16226517 17..238 100 -> Plus
arm_3L 16226743..16227127 352..738 99   Plus

BO27369.pep Sequence

Translation from 16 to 754

> BO27369.pep
MSRVINGFKSAVKATNYTPLVRNAAQFNQFQLPEIRKFSVESSPACWNCQ
KKSELKQNMICSDCGHLQDVNSGINYFKLLSFPIQFSLESQKLTRSFRQL
QTIVHPDKYSNKTSREQTNSSDWSSLINKAYKTLSTPIDRGQYLLQLEGE
QMPQDNSALNKEFLMAMMERNEEVEDAEDTQTLENLNIQLIKELEEMARK
LNALFDSKDLSGVKETLVEMKYLLSIQNSIKQKQQSLLGSASFLDH

BO27369.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:08:31
Subject Length Description Subject Range Query Range Score Percent Strand
Hsc20-PA 240 CG34246-PA 1..240 1..240 1219 100 Plus