BO27369.complete Sequence
754 bp assembled on 2010-08-18
GenBank Submission: KX794416
> BO27369.complete
GAAGTTATCAGTCGACATGAGTAGAGTTATTAATGGCTTTAAAAGTGCTG
TAAAAGCTACAAATTATACACCGCTTGTTAGAAATGCAGCACAATTTAAT
CAATTCCAGTTGCCAGAAATACGGAAATTTTCAGTTGAATCTTCGCCGGC
TTGTTGGAATTGCCAAAAGAAATCGGAATTAAAGCAGAATATGATATGTT
CGGACTGTGGACACTTGCAGGATGTTAACTCAGGAATAAATTACTTTAAA
CTGCTCAGCTTTCCCATTCAATTTTCTTTGGAGTCCCAGAAGTTGACAAG
AAGTTTTCGCCAGTTGCAGACCATTGTGCATCCCGATAAATATAGTAATA
AAACCTCACGGGAGCAAACAAACTCCTCAGACTGGAGTTCCCTCATCAAC
AAGGCATATAAAACGCTTTCCACGCCCATAGATCGTGGTCAGTACCTTCT
TCAACTGGAGGGCGAACAGATGCCGCAGGATAATAGCGCTCTTAACAAAG
AGTTTCTCATGGCCATGATGGAGCGGAACGAGGAGGTGGAGGATGCGGAA
GACACCCAAACGCTGGAGAATTTAAATATTCAGCTCATCAAGGAACTGGA
GGAGATGGCCCGGAAGTTAAATGCCCTTTTCGATAGCAAAGATCTTTCGG
GAGTCAAAGAAACCCTCGTAGAGATGAAGTACCTGCTGAGTATTCAGAAC
AGCATTAAACAGAAGCAACAAAGTTTGCTGGGCAGCGCAAGCTTTCTAGA
CCAT
BO27369.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:35:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Hsc20-RA | 723 | CG34246-PA | 1..720 | 17..736 | 3600 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:35:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Hsc20-RA | 927 | CG34246-RA | 70..789 | 17..736 | 3600 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:35:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 16233643..16234027 | 352..736 | 1925 | 100 | Plus |
3L | 28110227 | 3L | 16233196..16233417 | 17..238 | 1110 | 100 | Plus |
3L | 28110227 | 3L | 16233470..16233582 | 239..351 | 565 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 02:35:54 has no hits.
BO27369.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-18 15:54:35 Download gff for
BO27369.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG34246-RA | 77..796 | 17..738 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:17:44 Download gff for
BO27369.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Hsc20-RA | 70..789 | 17..738 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:14:40 Download gff for
BO27369.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Hsc20-RA | 70..789 | 17..738 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:14:40 Download gff for
BO27369.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 16233196..16233417 | 17..238 | 100 | -> | Plus |
3L | 16233470..16233582 | 239..351 | 100 | -> | Plus |
3L | 16233643..16234027 | 352..738 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:17:44 Download gff for
BO27369.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 16226570..16226682 | 239..351 | 100 | -> | Plus |
arm_3L | 16226296..16226517 | 17..238 | 100 | -> | Plus |
arm_3L | 16226743..16227127 | 352..738 | 99 | | Plus |
BO27369.pep Sequence
Translation from 16 to 754
> BO27369.pep
MSRVINGFKSAVKATNYTPLVRNAAQFNQFQLPEIRKFSVESSPACWNCQ
KKSELKQNMICSDCGHLQDVNSGINYFKLLSFPIQFSLESQKLTRSFRQL
QTIVHPDKYSNKTSREQTNSSDWSSLINKAYKTLSTPIDRGQYLLQLEGE
QMPQDNSALNKEFLMAMMERNEEVEDAEDTQTLENLNIQLIKELEEMARK
LNALFDSKDLSGVKETLVEMKYLLSIQNSIKQKQQSLLGSASFLDH
BO27369.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:08:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Hsc20-PA | 240 | CG34246-PA | 1..240 | 1..240 | 1219 | 100 | Plus |