Clone BO27380 Report

Search the DGRC for BO27380

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:273
Well:80
Vector:pDNR-Dual
Associated Gene/TranscriptCG9692-RB
Protein status:BO27380.pep: Imported from assembly
Sequenced Size:1180

Clone Sequence Records

BO27380.complete Sequence

1180 bp assembled on 2010-08-18

GenBank Submission: KX798322

> BO27380.complete
GAAGTTATCAGTCGACATGAAATCCCAGTACACCCGAAAAGCCAAACCAG
AGCCAGCAAAAACACCTACAGCACTAGAGCCCAAGACTAATACTAAACTG
GCGGGTCCAAAATCGAGATCCACGACGGTGGTGGTGAAGCGCCGGAATCG
CCGAAATTCCATTGATGGAGCAGCAGGAGGCTCCACTAGCGGCAATTCCG
AGGGGGGTAATTCCAGAGCAGCTTTCTCCGGAAGTGGTTATTCGGCAGGA
AATAATTCCGAAGGAGGTACATCGACTGGACGCAAGTCCATTGGTAGTAA
ATCCAGAGGAACTTATTTCCGAGCAAGTTATACCGGTGCTGGTAGTTCCG
GATCTGAGAATAGGTCGCCGCCCCAGCTTGTTCCGGTGCGGCGTAAGCCC
CTCAGTGATTACATGATGCTGGAGGAACAGCCATCTACCTCCAGTCGTCC
AACCACATCCTCTTCCTATTTATCGGACCAGGATCGTCCGATGAGTTATG
CCGCTGCGGTGGAATCACTCCCCATATCTAGGCTCAAGGTCAAGGTGGTG
CTATCCCCACGTCTCAAGCGGTCCGGCAATCAGCCGCCGATCAAGCGGCC
GAACCGTAAAAATTCACCCAACGCCAAGGTCAAATCGATCCCACCGACGC
AGTCTAAGACACACAATATCCAGCTAAATCCGAAGCGCAATATGGCCCAG
GTCCCGCCCCAATCCCGCGATGCCACCGTGAGTAACAAGTCGAATAACTT
AGCGCCACCTGGCGGAAACAAAAAGAAACCCAAGTCGAAGAAATCCCAAA
AGCTAAAGCAAAATCAACCACGATCAGAAGCTACTTCTCCGGAGCAGCCA
GCCTCACCAAAGTCTTTATCACCTTGTGATAATCAAAGTTCTCCGCCGAA
GTTCTCCGATTCCAACGCCTATCTGGACCATCACCATGAGAAAATGCAGC
GCTTTCTGGCTGAGCAAACGGCTGGTCAAAAGCCGTATCCCAACCGTGGC
CAAGTGAAGACCTGCAAACAAAATGTCCAGCTGCCAACCAATCGATCCCT
CTTCGACTTCGATGAGCGACTATTCAGACGCGGGGATCTCGAGTCGGCCG
CATTTTTGGCCCAGAACCAGGCCATGATACGCATGTGGCTGAACCCTAAT
ATGCTGATCTCCGCAAGCTTTCTAGACCAT

BO27380.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 08:55:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG9692-RB 1149 CG9692-PB 1..1146 17..1162 5730 100 Plus
CG9692-RC 753 CG9692-PC 1..750 413..1162 3750 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 08:55:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG9692-RB 1393 CG9692-RB 45..1190 17..1162 5730 100 Plus
CG9692-RC 1389 CG9692-RC 45..1186 17..1162 5635 99.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 08:55:03
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 16705110..16706225 47..1162 5580 100 Plus
Blast to na_te.dros performed on 2014-11-28 08:55:04 has no hits.

BO27380.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-18 15:52:39 Download gff for BO27380.complete
Subject Subject Range Query Range Percent Splice Strand
CG9692-RB 1..1146 17..1164 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:31:36 Download gff for BO27380.complete
Subject Subject Range Query Range Percent Splice Strand
CG9692-RB 45..1190 17..1164 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:27:24 Download gff for BO27380.complete
Subject Subject Range Query Range Percent Splice Strand
CG9692-RB 45..1190 17..1164 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:27:24 Download gff for BO27380.complete
Subject Subject Range Query Range Percent Splice Strand
3L 16705017..16705046 17..46 100 -> Plus
3L 16705110..16706225 47..1164 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:31:36 Download gff for BO27380.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 16698117..16698146 17..46 100 -> Plus
arm_3L 16698210..16699325 47..1164 99   Plus

BO27380.pep Sequence

Translation from 16 to 1180

> BO27380.pep
MKSQYTRKAKPEPAKTPTALEPKTNTKLAGPKSRSTTVVVKRRNRRNSID
GAAGGSTSGNSEGGNSRAAFSGSGYSAGNNSEGGTSTGRKSIGSKSRGTY
FRASYTGAGSSGSENRSPPQLVPVRRKPLSDYMMLEEQPSTSSRPTTSSS
YLSDQDRPMSYAAAVESLPISRLKVKVVLSPRLKRSGNQPPIKRPNRKNS
PNAKVKSIPPTQSKTHNIQLNPKRNMAQVPPQSRDATVSNKSNNLAPPGG
NKKKPKSKKSQKLKQNQPRSEATSPEQPASPKSLSPCDNQSSPPKFSDSN
AYLDHHHEKMQRFLAEQTAGQKPYPNRGQVKTCKQNVQLPTNRSLFDFDE
RLFRRGDLESAAFLAQNQAMIRMWLNPNMLISASFLDH

BO27380.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:20:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG9692-PB 382 CG9692-PB 1..382 1..382 1973 100 Plus
CG9692-PC 250 CG9692-PC 1..250 133..382 1299 100 Plus