BO27387.complete Sequence
1189 bp assembled on 2010-08-18
GenBank Submission: KX796448
> BO27387.complete
GAAGTTATCAGTCGACATGGGAATTTTGGGCTTATCTAAGCTCATTGCCG
ATCTGGCGCCACAGGCGATTCGCGAAAGTGAGATGAAGCATTTTTTCGGT
CGCAAGGTAGCAATCGATGCTAGTATGTGCCTGTACCAGTTCCTCATCGC
CGTGCGCTCCGAAGGCGCCCAGTTGGCCACCGTAAATGGTGATCCCACGT
CCCACTTAATGGGCATGTTCTACCGCACCATCCGATTGCTGGACAACGGA
ATCAAGCCGGTATATGTCTTCGACGGAAAGCCACCAGATCTCAAGTCCGG
TGAGCTGGCGAAGCGCGCCGAGCGGCGGGAGGAAGCGGAGAAGGCACTGA
AGGCGGCCACCGATGCGGGAGATGATGCCGGTATCGAAAAGTTTAATCGC
CGATTGGTCCGGGTAACGAAGGAGCACGCCAAAGAGGCCAAGGAACTGCT
CACACTAATGGGTGTGCCCTATGTTGATGCACCGTGCGAAGCGGAGGCCC
AGTGTGCCGCTCTGGTGAAAGCTGGAAAGGTTTATGCCACCGCCACGGAG
GATATGGATGCCCTCACATTCGGATCTACAAAACTGTTGAGATACCTTAC
CTACAGCGAGGCACGAAAGATGCCCGTCAAGGAGTTCAGCTACGACAAGC
TGTTGGAAGGTCTGGCCATTAACAATCGAGAGTTCATTGATCTATGTATT
CTGCTGGGTTGCGATTACTGTGAGAGCATCAAGGGTATTGGACCCAAGCG
AGCGATCGAACTGATCAACACCTATCGGGATATAGAGACTATTCTGGATA
ACCTGGACTCTAGCAAATACACCGTGCCCGAGAACTGGAACTACAAGGTG
GCGCGGGAACTCTTCATCGAACCGGAGGTAGCTGATGCCGACTCCATAGA
TCTCAAATGGGTCGAGCCGGATGAGGAGGGCCTTGTCAAGTTTCTCTGCG
GCGACCGGCAGTTCAACGAAGAGCGCGTTCGCAACGGTGCCAAAAAGCTG
ATGAAATCCAAGCAGGCCCAGACTCAGGTGAGACTCGATAGCTTCTTTAA
GACACTGCCCAGCACTCCGAATGCCACAAACGCTGCAAAACGGAAGGCCG
AGGAAGCAAAGAAGAGCGCCAATAACAAAAAGGCCAAGACCAGCGGCGGT
GGACGAGGCCGGCGACCCAAGGCAAGCTTTCTAGACCAT
BO27387.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 08:55:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Fen1-RA | 1158 | CG8648-PA | 1..1155 | 17..1171 | 5775 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 08:55:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Fen1-RA | 1378 | CG8648-RA | 122..1281 | 12..1171 | 5785 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 08:55:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 16854122..16855195 | 1171..98 | 5370 | 100 | Minus |
| 2R | 25286936 | 2R | 16855255..16855343 | 100..12 | 430 | 98.9 | Minus |
Blast to na_te.dros performed on 2014-11-28 08:55:15 has no hits.
BO27387.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-18 15:52:41 Download gff for
BO27387.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Fen1-RA | 1..1155 | 17..1173 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:31:40 Download gff for
BO27387.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Fen1-RA | 127..1281 | 17..1173 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:27:27 Download gff for
BO27387.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Fen1-RA | 127..1281 | 17..1173 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:27:27 Download gff for
BO27387.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 16854120..16855194 | 99..1173 | 99 | <- | Minus |
| 2R | 16855257..16855338 | 17..98 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:31:40 Download gff for
BO27387.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 12741625..12742699 | 99..1173 | 99 | <- | Minus |
| arm_2R | 12742762..12742843 | 17..98 | 100 | | Minus |
BO27387.pep Sequence
Translation from 16 to 1189
> BO27387.pep
MGILGLSKLIADLAPQAIRESEMKHFFGRKVAIDASMCLYQFLIAVRSEG
AQLATVNGDPTSHLMGMFYRTIRLLDNGIKPVYVFDGKPPDLKSGELAKR
AERREEAEKALKAATDAGDDAGIEKFNRRLVRVTKEHAKEAKELLTLMGV
PYVDAPCEAEAQCAALVKAGKVYATATEDMDALTFGSTKLLRYLTYSEAR
KMPVKEFSYDKLLEGLAINNREFIDLCILLGCDYCESIKGIGPKRAIELI
NTYRDIETILDNLDSSKYTVPENWNYKVARELFIEPEVADADSIDLKWVE
PDEEGLVKFLCGDRQFNEERVRNGAKKLMKSKQAQTQVRLDSFFKTLPST
PNATNAAKRKAEEAKKSANNKKAKTSGGGRGRRPKASFLDH
BO27387.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:21:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Fen1-PA | 385 | CG8648-PA | 1..385 | 1..385 | 1970 | 100 | Plus |
| Gen-PA | 726 | CG10670-PA | 1..255 | 4..265 | 250 | 29.7 | Plus |
| mus201-PD | 1236 | CG10890-PD | 824..972 | 94..253 | 180 | 30 | Plus |
| mus201-PC | 1236 | CG10890-PC | 824..972 | 94..253 | 180 | 30 | Plus |
| tos-PA | 732 | CG10387-PA | 1..243 | 1..250 | 173 | 26.6 | Plus |
