BO27389.complete Sequence
439 bp assembled on 2010-08-18
GenBank Submission: KX800004
> BO27389.complete
GAAGTTATCAGTCGACATGGGTTTTCACATGGGACGACAGCTGCTACTCT
CCGGATTCCTGCTGGTGATGCTTCAGATGGTGACCCAAACGCAGGCCAGG
CCGCAGGATGTGATCACAGTTGCTGGCGAGGAGACAGAGGTGGTGATCAA
GCGGGAGGGCGATGACGATGGAGACGACGATGACTCCTCCTCCGAGGAAA
CAGTCGAGGATTCCGAGGAAAGCAGACGCAGACGACGCGAGGTGAATACG
GACAACACGCCATCGGCTCGAGCGGTTATTCCAGGCGAGCAAGTAGTCCC
CATTCTCTTGGAGGCCATTCTTCCCAGCGTGGATGCAGCGGGCGATCGCT
TCGCAAGATCTGTGCAATTTCTGAAAAACTTGACCCCTGGCTCTGAATTG
TTTGCCGTCGAGAAGAACGAAGCAAGCTTTCTAGACCAT
BO27389.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 08:55:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Os-C-RC | 408 | CG3250-PC | 1..405 | 17..421 | 2025 | 100 | Plus |
| Os-C-RD | 396 | CG3250-PD | 1..393 | 17..421 | 1810 | 97 | Plus |
| Os-C-RB | 462 | CG3250-PB | 1..269 | 17..285 | 1345 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 08:55:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Os-C-RC | 550 | CG3250-RC | 17..421 | 17..421 | 2025 | 100 | Plus |
| Os-C-RD | 538 | CG3250-RD | 17..409 | 17..421 | 1810 | 97 | Plus |
| Os-C-RB | 604 | CG3250-RB | 17..285 | 17..285 | 1345 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 08:55:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 7979114..7979295 | 104..285 | 910 | 100 | Plus |
| 3R | 32079331 | 3R | 7979347..7979485 | 283..421 | 695 | 100 | Plus |
| 3R | 32079331 | 3R | 7978975..7979065 | 17..107 | 455 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 08:55:22 has no hits.
BO27389.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-18 15:52:42 Download gff for
BO27389.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Os-C-RC | 17..421 | 17..423 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:31:43 Download gff for
BO27389.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Os-C-RC | 17..421 | 17..423 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:27:29 Download gff for
BO27389.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Os-C-RC | 17..421 | 17..423 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:27:29 Download gff for
BO27389.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 7978975..7979064 | 17..106 | 100 | -> | Plus |
| 3R | 7979117..7979294 | 107..284 | 100 | -> | Plus |
| 3R | 7979349..7979485 | 285..423 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:31:43 Download gff for
BO27389.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 3804697..3804786 | 17..106 | 100 | -> | Plus |
| arm_3R | 3804839..3805016 | 107..284 | 100 | -> | Plus |
| arm_3R | 3805071..3805207 | 285..423 | 98 | | Plus |
BO27389.pep Sequence
Translation from 16 to 439
> BO27389.pep
MGFHMGRQLLLSGFLLVMLQMVTQTQARPQDVITVAGEETEVVIKREGDD
DGDDDDSSSEETVEDSEESRRRRREVNTDNTPSARAVIPGEQVVPILLEA
ILPSVDAAGDRFARSVQFLKNLTPGSELFAVEKNEASFLDH
BO27389.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:21:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Os-C-PC | 135 | CG3250-PC | 1..135 | 1..135 | 670 | 100 | Plus |
| Os-C-PB | 153 | CG3250-PB | 1..153 | 1..135 | 641 | 88.2 | Plus |
| Os-C-PD | 131 | CG3250-PD | 1..131 | 1..135 | 635 | 97 | Plus |
