Clone BO27392 Report

Search the DGRC for BO27392

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:273
Well:92
Vector:pDNR-Dual
Associated Gene/TranscriptCG5171-RD
Protein status:BO27392.pep: Imported from assembly
Sequenced Size:922

Clone Sequence Records

BO27392.complete Sequence

922 bp assembled on 2010-08-18

GenBank Submission: KX797042

> BO27392.complete
GAAGTTATCAGTCGACATGAAATCTATCGTATTTTTATTGGCATTACTTC
TAAACGCGACAAGGAGTTATCGGGAAATTGTGAAAATGCCTGAGAAACAA
GTGGCACCTGTAATTAGTAATCTCGAGGATTTTGCGAATAATTTACCTGG
GTATCTAATTTCTGAAAGTCCAGTTGCCGTACTCCTGGACTACGATGGCA
CCCTAGCTCCCATTGCGGATAATCCAGCGAAGACCAAAATGCCCGTGGAA
CTGGAGGCCATACTGCACAAGATAGCCAAGCATCCCAAAGTTTTTCTCGC
TGTGATCTCGGGTCGCGGACTGAAAGATGTGCAAAAACAAGTAAATATCG
ATGGCATTACATATGCTGGTAATCATGGACTGGAAATCGAGTATCCCGAT
GGCTCCAGGCACGATTACGAGCTACCCACGGAGATCCAGAAAAACTACAC
ACAAATGGTTAGGGAGCTCAAGGAGAAGGTGGAGAAGAATGGAGCCTGGG
TGGAGGATAAGAAGGTGTCACTCACCTACCACTACAGAGATACGCCCGCA
GCCCTGAAGGATCAGCAAAAGCAGTTGGCTTCGGAGATCTGCACAAAGTT
CGGATTCCGTGCGAATCAGGCCCATGAAGCCATCGAAGCTAAGCCCCCAG
TGAATTGGAACAAGGGAGAGGCTGCCGTGTATATTCTGAAGCAGAAATTC
GGGGATAATTGGTCGCAGAAAGTGAGTGTGGTCTTTGCGGGCGATGACAC
CACCGATGAAGATGCCATGAGAGTGCTTCGAGGCTTGGGTCGCTCGTTTA
GAATTTCTGCTGATGCCCAGATTCAAACTTATGCGGATTTCCGGTTGCCC
AAGCAGGCTGTAATGACCGATCTTCTCAAATGGATAGCCAATGTGTATGT
TTCTGCAAGCTTTCTAGACCAT

BO27392.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 08:55:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG5171-RD 891 CG5171-PD 1..888 17..904 4440 100 Plus
CG5171-RF 822 CG5171-PF 1..819 86..904 4095 100 Plus
CG5171-RE 822 CG5171-PE 1..819 86..904 4095 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 08:55:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG5171-RD 1156 CG5171-RD 104..991 17..904 4440 100 Plus
CG5171-RF 1182 CG7-RF 131..1017 18..904 4435 100 Plus
CG5171-RE 1137 CG5171-RE 86..972 18..904 4435 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 08:55:33
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 7403541..7404166 150..775 3130 100 Plus
2L 23513712 2L 7403229..7403364 18..153 680 100 Plus
2L 23513712 2L 7404230..7404361 773..904 660 100 Plus
Blast to na_te.dros performed on 2014-11-28 08:55:34 has no hits.

BO27392.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-18 15:52:44 Download gff for BO27392.complete
Subject Subject Range Query Range Percent Splice Strand
CG5171-RC 85..973 17..906 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:31:47 Download gff for BO27392.complete
Subject Subject Range Query Range Percent Splice Strand
CG5171-RD 104..991 17..906 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:27:33 Download gff for BO27392.complete
Subject Subject Range Query Range Percent Splice Strand
CG5171-RD 104..991 17..906 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:27:33 Download gff for BO27392.complete
Subject Subject Range Query Range Percent Splice Strand
2L 7403227..7403361 17..150 99 -> Plus
2L 7403542..7404163 151..772 100 -> Plus
2L 7404230..7404361 773..906 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:31:47 Download gff for BO27392.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 7403227..7403361 17..150 99 -> Plus
arm_2L 7403542..7404163 151..772 100 -> Plus
arm_2L 7404230..7404361 773..906 98   Plus

BO27392.pep Sequence

Translation from 16 to 922

> BO27392.pep
MKSIVFLLALLLNATRSYREIVKMPEKQVAPVISNLEDFANNLPGYLISE
SPVAVLLDYDGTLAPIADNPAKTKMPVELEAILHKIAKHPKVFLAVISGR
GLKDVQKQVNIDGITYAGNHGLEIEYPDGSRHDYELPTEIQKNYTQMVRE
LKEKVEKNGAWVEDKKVSLTYHYRDTPAALKDQQKQLASEICTKFGFRAN
QAHEAIEAKPPVNWNKGEAAVYILKQKFGDNWSQKVSVVFAGDDTTDEDA
MRVLRGLGRSFRISADAQIQTYADFRLPKQAVMTDLLKWIANVYVSASFL
DH

BO27392.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:22:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG5171-PD 296 CG5171-PD 1..296 1..296 1523 100 Plus
CG5171-PF 273 CG5171-PF 1..273 24..296 1417 100 Plus
CG5171-PE 273 CG5171-PE 1..273 24..296 1417 100 Plus
CG5171-PA 273 CG5171-PA 1..273 24..296 1417 100 Plus
CG5171-PB 273 CG5171-PB 1..273 24..296 1417 100 Plus