BO27392.complete Sequence
922 bp assembled on 2010-08-18
GenBank Submission: KX797042
> BO27392.complete
GAAGTTATCAGTCGACATGAAATCTATCGTATTTTTATTGGCATTACTTC
TAAACGCGACAAGGAGTTATCGGGAAATTGTGAAAATGCCTGAGAAACAA
GTGGCACCTGTAATTAGTAATCTCGAGGATTTTGCGAATAATTTACCTGG
GTATCTAATTTCTGAAAGTCCAGTTGCCGTACTCCTGGACTACGATGGCA
CCCTAGCTCCCATTGCGGATAATCCAGCGAAGACCAAAATGCCCGTGGAA
CTGGAGGCCATACTGCACAAGATAGCCAAGCATCCCAAAGTTTTTCTCGC
TGTGATCTCGGGTCGCGGACTGAAAGATGTGCAAAAACAAGTAAATATCG
ATGGCATTACATATGCTGGTAATCATGGACTGGAAATCGAGTATCCCGAT
GGCTCCAGGCACGATTACGAGCTACCCACGGAGATCCAGAAAAACTACAC
ACAAATGGTTAGGGAGCTCAAGGAGAAGGTGGAGAAGAATGGAGCCTGGG
TGGAGGATAAGAAGGTGTCACTCACCTACCACTACAGAGATACGCCCGCA
GCCCTGAAGGATCAGCAAAAGCAGTTGGCTTCGGAGATCTGCACAAAGTT
CGGATTCCGTGCGAATCAGGCCCATGAAGCCATCGAAGCTAAGCCCCCAG
TGAATTGGAACAAGGGAGAGGCTGCCGTGTATATTCTGAAGCAGAAATTC
GGGGATAATTGGTCGCAGAAAGTGAGTGTGGTCTTTGCGGGCGATGACAC
CACCGATGAAGATGCCATGAGAGTGCTTCGAGGCTTGGGTCGCTCGTTTA
GAATTTCTGCTGATGCCCAGATTCAAACTTATGCGGATTTCCGGTTGCCC
AAGCAGGCTGTAATGACCGATCTTCTCAAATGGATAGCCAATGTGTATGT
TTCTGCAAGCTTTCTAGACCAT
BO27392.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 08:55:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5171-RD | 891 | CG5171-PD | 1..888 | 17..904 | 4440 | 100 | Plus |
CG5171-RF | 822 | CG5171-PF | 1..819 | 86..904 | 4095 | 100 | Plus |
CG5171-RE | 822 | CG5171-PE | 1..819 | 86..904 | 4095 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 08:55:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5171-RD | 1156 | CG5171-RD | 104..991 | 17..904 | 4440 | 100 | Plus |
CG5171-RF | 1182 | CG7-RF | 131..1017 | 18..904 | 4435 | 100 | Plus |
CG5171-RE | 1137 | CG5171-RE | 86..972 | 18..904 | 4435 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 08:55:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 7403541..7404166 | 150..775 | 3130 | 100 | Plus |
2L | 23513712 | 2L | 7403229..7403364 | 18..153 | 680 | 100 | Plus |
2L | 23513712 | 2L | 7404230..7404361 | 773..904 | 660 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 08:55:34 has no hits.
BO27392.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-18 15:52:44 Download gff for
BO27392.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5171-RC | 85..973 | 17..906 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:31:47 Download gff for
BO27392.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5171-RD | 104..991 | 17..906 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:27:33 Download gff for
BO27392.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5171-RD | 104..991 | 17..906 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:27:33 Download gff for
BO27392.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 7403227..7403361 | 17..150 | 99 | -> | Plus |
2L | 7403542..7404163 | 151..772 | 100 | -> | Plus |
2L | 7404230..7404361 | 773..906 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:31:47 Download gff for
BO27392.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 7403227..7403361 | 17..150 | 99 | -> | Plus |
arm_2L | 7403542..7404163 | 151..772 | 100 | -> | Plus |
arm_2L | 7404230..7404361 | 773..906 | 98 | | Plus |
BO27392.pep Sequence
Translation from 16 to 922
> BO27392.pep
MKSIVFLLALLLNATRSYREIVKMPEKQVAPVISNLEDFANNLPGYLISE
SPVAVLLDYDGTLAPIADNPAKTKMPVELEAILHKIAKHPKVFLAVISGR
GLKDVQKQVNIDGITYAGNHGLEIEYPDGSRHDYELPTEIQKNYTQMVRE
LKEKVEKNGAWVEDKKVSLTYHYRDTPAALKDQQKQLASEICTKFGFRAN
QAHEAIEAKPPVNWNKGEAAVYILKQKFGDNWSQKVSVVFAGDDTTDEDA
MRVLRGLGRSFRISADAQIQTYADFRLPKQAVMTDLLKWIANVYVSASFL
DH
BO27392.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:22:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5171-PD | 296 | CG5171-PD | 1..296 | 1..296 | 1523 | 100 | Plus |
CG5171-PF | 273 | CG5171-PF | 1..273 | 24..296 | 1417 | 100 | Plus |
CG5171-PE | 273 | CG5171-PE | 1..273 | 24..296 | 1417 | 100 | Plus |
CG5171-PA | 273 | CG5171-PA | 1..273 | 24..296 | 1417 | 100 | Plus |
CG5171-PB | 273 | CG5171-PB | 1..273 | 24..296 | 1417 | 100 | Plus |