Clone BO27401 Report

Search the DGRC for BO27401

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:274
Well:1
Vector:pDNR-Dual
Associated Gene/TranscriptCG17770-RA
Protein status:BO27401.pep: Imported from assembly
Sequenced Size:526

Clone Sequence Records

BO27401.complete Sequence

526 bp assembled on 2010-08-18

GenBank Submission: KX796107

> BO27401.complete
GAAGTTATCAGTCGACATGGATTTCGAATTCCTTACTCCGCCGCCAGAGG
AACGGACCATTCGCACCCACAATCTGACCGAAGAACAGGTCAAGGATTTG
GAGATTGCCTTTTCCCTGTTTGACGACCAAGACACTAAGGTTATTCCTAT
AACAAATCTCAGGCAACTAATGCTGTCTGTGGCCCACTATCCCAGTGATA
TGGAATTGCAGGAAATTCAGGCCGAGATCGATGCTGATGGATCCGGTGAG
TTATATCTCAGCGATTTCCTTCACATCATGTCTCAGAGGTACGCAAACAT
GTCTACCGAGGATGAAATTATAGCTGCATTCAGAGTCTTTGACAAAGAAG
GAACCGGCTTAATATCTGAATCGGAATTTCGTCACATAATGCAGAACATG
GGGGAGCAATTGACGGATGATGAGGTGGAGGAGATCATCCGTGATGCAAA
TTCTGATTTGGAAGGCAATATAGACTATGTGCGATTTGTCAGAATGATGT
CCACTACAGCAAGCTTTCTAGACCAT

BO27401.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:40:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG17770-RA 495 CG17770-PA 1..492 17..508 2460 100 Plus
CG5024-RB 498 CG5024-PB 209..351 222..364 190 75.5 Plus
CG5024-RA 498 CG5024-PA 209..351 222..364 190 75.5 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:40:40
Subject Length Description Subject Range Query Range Score Percent Strand
Acam-RB 1224 CG17769-RB 78..570 16..508 2465 100 Plus
CG17770-RA 1224 CG17770-RA 78..570 16..508 2465 100 Plus
CG5024-RB 643 CG5024-RB 318..460 222..364 190 75.5 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:40:36
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 25811988..25812480 16..508 2465 100 Plus
3R 32079331 3R 25811413..25811555 222..364 190 75.5 Plus
Blast to na_te.dros performed on 2014-11-28 02:40:37 has no hits.

BO27401.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-18 15:55:39 Download gff for BO27401.complete
Subject Subject Range Query Range Percent Splice Strand
CG17770-RA 1..492 17..510 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:19:27 Download gff for BO27401.complete
Subject Subject Range Query Range Percent Splice Strand
CG17770-RA 79..570 17..510 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:16:13 Download gff for BO27401.complete
Subject Subject Range Query Range Percent Splice Strand
CG17770-RA 79..570 17..510 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:16:13 Download gff for BO27401.complete
Subject Subject Range Query Range Percent Splice Strand
3R 25811989..25812480 17..510 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:19:27 Download gff for BO27401.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 21637711..21638202 17..510 99   Plus

BO27401.pep Sequence

Translation from 16 to 526

> BO27401.pep
MDFEFLTPPPEERTIRTHNLTEEQVKDLEIAFSLFDDQDTKVIPITNLRQ
LMLSVAHYPSDMELQEIQAEIDADGSGELYLSDFLHIMSQRYANMSTEDE
IIAAFRVFDKEGTGLISESEFRHIMQNMGEQLTDDEVEEIIRDANSDLEG
NIDYVRFVRMMSTTASFLDH

BO27401.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:17:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG17770-PA 164 CG17770-PA 1..164 1..164 833 100 Plus
CG5024-PB 165 CG5024-PB 3..165 2..164 516 58.9 Plus
CG5024-PA 165 CG5024-PA 3..165 2..164 516 58.9 Plus
Cam-PD 149 CG8472-PD 5..148 20..163 337 45.1 Plus
Cam-PC 149 CG8472-PC 5..148 20..163 337 45.1 Plus