BO27404.complete Sequence
1009 bp assembled on 2010-08-18
GenBank Submission: KX796665
> BO27404.complete
GAAGTTATCAGTCGACATGACCGCCTCACCGGGTCTTCTGCACATGGATC
AACCGCTCAGAGCCATCTATCAATTCTTACTCGACTTGCTAGTGTTTACG
ATTAAATCGGTGTACTACGTACTCGAATCGATTTACTACAGTCTGTTGCC
GCAGCGCTTTCGAAAGTTAAAGGACATCTCCGGCCAGGTGGTGCTCATCA
CAGGAGGAGGCGGTGGTGTTGGACGTTTGATTGCCCTAAACTTTGCTCGC
CTTCAGGCCCGCATTGTCATCTGGGATATAAATCAAGAAGCCATAAAGAC
AACTGTGGATTTGTTGGCCAAACATGGTTATGACAACTGCAAGGGCTACG
TTGTGGACATCTCAGATCGGGAGCAGATCTACCAGCGTGCCAGCCAGGTG
ACCGAGGAGGTTGGTCCCGTCGACATATTGATTAACAATGCCGGTATCGT
GTGCTGCAAACCCTTCTGGGAGCTGCACGATCGGGTCATCCAGAACACGT
ACAACATTAACATCATATCGCACTACTGGACCGTGAAAGCGTTTCTGCCT
CACATGATGCGCAATAATCGTGGTCATATCGTTACTGTGGGCTCGGTAAC
TGGAATGCTGGGCACCTACGGATGCAGTGACTACGCGGCCACCAAATACG
CCTGCATCGGTTTCCACGAGAGTTTGCTCACCGATCTGAAGGCCCATGGC
TATGATCAAATCCAAATGAGTTTGATCTGCCCGTACTACATCAACACGGG
CATGTTTTCGGGTGTTCGGCCGCGGATGATGCCCATGCTGGAGCCGCAGT
ATGTGGCGGATCGCATCGAGAACGCCGTGCGCTGCAACGAGGTGTGGTGC
GTGCTGCCCAACTCTATTCGCCTGCTCACTCCTCTCAAATGTCTTTTGCC
CGCCAAAATGTGCTGGGAGCTGATGTCGCGTGTCATCCGTGGACCCGAGT
CTATGATGATGTTTCAGGGACGAGGGCGCGTCGCCGCTGGTGCAAGCTTT
CTAGACCAT
BO27404.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:40:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15629-RA | 978 | CG15629-PA | 1..975 | 17..991 | 4875 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:40:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15629-RA | 1432 | CG15629-RA | 345..1320 | 16..991 | 4880 | 100 | Plus |
| CG3225-RA | 2387 | CG3225-RA | 2221..2321 | 991..891 | 505 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:40:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 4815021..4815623 | 289..891 | 3015 | 100 | Plus |
| 2L | 23513712 | 2L | 4813353..4813510 | 16..173 | 790 | 100 | Plus |
| 2L | 23513712 | 2L | 4814768..4814887 | 171..290 | 600 | 100 | Plus |
| 2L | 23513712 | 2L | 4815679..4815779 | 891..991 | 505 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 02:40:43 has no hits.
BO27404.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-18 15:55:41 Download gff for
BO27404.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15629-RA | 330..1304 | 17..993 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:19:29 Download gff for
BO27404.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15629-RA | 346..1320 | 17..993 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:16:15 Download gff for
BO27404.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15629-RA | 346..1320 | 17..993 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:16:15 Download gff for
BO27404.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 4813354..4813509 | 17..172 | 100 | -> | Plus |
| 2L | 4814770..4814887 | 173..290 | 100 | -> | Plus |
| 2L | 4815023..4815623 | 291..891 | 100 | -> | Plus |
| 2L | 4815680..4815779 | 892..993 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:19:29 Download gff for
BO27404.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 4813354..4813509 | 17..172 | 100 | -> | Plus |
| arm_2L | 4814770..4814887 | 173..290 | 100 | -> | Plus |
| arm_2L | 4815023..4815623 | 291..891 | 100 | -> | Plus |
| arm_2L | 4815680..4815779 | 892..993 | 98 | | Plus |
BO27404.pep Sequence
Translation from 16 to 1009
> BO27404.pep
MTASPGLLHMDQPLRAIYQFLLDLLVFTIKSVYYVLESIYYSLLPQRFRK
LKDISGQVVLITGGGGGVGRLIALNFARLQARIVIWDINQEAIKTTVDLL
AKHGYDNCKGYVVDISDREQIYQRASQVTEEVGPVDILINNAGIVCCKPF
WELHDRVIQNTYNINIISHYWTVKAFLPHMMRNNRGHIVTVGSVTGMLGT
YGCSDYAATKYACIGFHESLLTDLKAHGYDQIQMSLICPYYINTGMFSGV
RPRMMPMLEPQYVADRIENAVRCNEVWCVLPNSIRLLTPLKCLLPAKMCW
ELMSRVIRGPESMMMFQGRGRVAAGASFLDH
BO27404.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:17:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15629-PA | 325 | CG15629-PA | 1..325 | 1..325 | 1722 | 100 | Plus |
| CG9265-PD | 399 | CG9265-PD | 56..337 | 23..307 | 580 | 39.6 | Plus |
| CG9265-PC | 399 | CG9265-PC | 56..337 | 23..307 | 580 | 39.6 | Plus |
| CG9265-PB | 399 | CG9265-PB | 56..337 | 23..307 | 580 | 39.6 | Plus |
| CG9265-PA | 399 | CG9265-PA | 56..337 | 23..307 | 580 | 39.6 | Plus |
