BO27417.complete Sequence
1030 bp assembled on 2010-08-18
GenBank Submission: KX795045
> BO27417.complete
GAAGTTATCAGTCGACATGGCCAGCCAAAGGATACGGAGCCGGCCAGAAG
AAGGACGAAAAGGACGAAGAATGAGCAGCGCCTGCCGACCGGGAGCCTTG
CATACGGCATTCAATATGCTGGCGTTGAGCTGGATTATAATCTCAGAGTT
ATTGCTCAGTGCTCACTGCCTGAAGGACCTGAAGATATTTGTACCAGAGG
CCGTATTAATGGGAAATGCAGCGACATTGTCTTGTCAATACGATTTGGAG
CAGGCGGCGCTTTACGCGGTACGCTGGTACTTCGGACAGGAGGAGTTCTA
CCGCTACGTTCCACGCGAGGCCAAGCCCACATTTGTCTTCGCCGTTGCCG
GCATTAATGTTGATCTCGCCAACTCGGATGCCACGTCGGTGACGTTGAAG
GGTGTCACCCGGGAGCTGAGCGGCAGCTATCAGTGCGAGGTCTCCGAGGA
CGCACCGCTCTTCCACACCGAGATTCGATCGGCCCACATGCAGGTGATTG
AGCTGCCCAAAGACGATCCGGTGATGCAGGTGGACAAGAAGGTGATTGGC
GTGAACGACAACTTCAAGGCTGTGTGCACGGTGGGCCCTTCGTATCCGCC
GGCCAACATCACCTGGAGCATCAACGGAAACCAGATCCGCAGGACGCCGC
TGCAGCGCATCTCGCAGGACACCTACGAGGGCTCCACTACGTACTCCTCG
CTGGATATCTACCCCAACAGCCAGGCGCTGCAGGGCTTCTTCGAGACGAA
GTATCAGCACAGCGTGAACCTGCAGTGCGTGGTGACCATCCGGCACATGT
ACCACAAAGTCGTGGCGCAGCGGATCGGGCTGAATGCTGCGCCGCCGACG
ACCATATCGCCGAATCTGCTGGGACTCGAGGGATCCAAGCGGTATGCCAA
CGGAGATCCGGACAACTCGGCGCTGACAGGCGCCTCGCAGCGCTGCTGCA
TTTGCTGTGGAGCCTTTGGCGCTGTTTCGCTGGCGATTTTCACACTGGCC
ATGGCGCATCTGGCAAGCTTTCTAGACCAT
BO27417.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:40:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| beat-VI-RB | 999 | CG14064-PB | 1..996 | 17..1012 | 4980 | 100 | Plus |
| beat-VI-RA | 999 | CG14064-PA | 1..996 | 17..1012 | 4980 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:40:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| beat-VI-RB | 3540 | CG14064-RB | 752..1750 | 14..1012 | 4995 | 100 | Plus |
| beat-VI-RA | 1915 | CG14064-RA | 752..1750 | 14..1012 | 4995 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:40:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 28472644..28473024 | 632..1012 | 1905 | 100 | Plus |
| 3R | 32079331 | 3R | 28472155..28472424 | 365..634 | 1350 | 100 | Plus |
| 3R | 32079331 | 3R | 28462052..28462199 | 14..161 | 740 | 100 | Plus |
| 3R | 32079331 | 3R | 28464075..28464189 | 250..364 | 575 | 100 | Plus |
| 3R | 32079331 | 3R | 28463714..28463807 | 161..254 | 470 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 02:40:55 has no hits.
BO27417.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-18 15:55:43 Download gff for
BO27417.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| beat-VI-RA | 759..1754 | 17..1014 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:19:33 Download gff for
BO27417.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| beat-VI-RA | 755..1750 | 17..1014 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:16:20 Download gff for
BO27417.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| beat-VI-RA | 755..1750 | 17..1014 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:16:20 Download gff for
BO27417.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 28462055..28462199 | 17..161 | 100 | -> | Plus |
| 3R | 28463715..28463806 | 162..253 | 100 | -> | Plus |
| 3R | 28464079..28464189 | 254..364 | 100 | -> | Plus |
| 3R | 28472155..28472424 | 365..634 | 100 | -> | Plus |
| 3R | 28472647..28473024 | 635..1014 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:19:33 Download gff for
BO27417.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 24287777..24287921 | 17..161 | 100 | -> | Plus |
| arm_3R | 24289437..24289528 | 162..253 | 100 | -> | Plus |
| arm_3R | 24289801..24289911 | 254..364 | 100 | -> | Plus |
| arm_3R | 24297877..24298146 | 365..634 | 100 | -> | Plus |
| arm_3R | 24298369..24298746 | 635..1014 | 99 | | Plus |
BO27417.pep Sequence
Translation from 16 to 1030
> BO27417.pep
MASQRIRSRPEEGRKGRRMSSACRPGALHTAFNMLALSWIIISELLLSAH
CLKDLKIFVPEAVLMGNAATLSCQYDLEQAALYAVRWYFGQEEFYRYVPR
EAKPTFVFAVAGINVDLANSDATSVTLKGVTRELSGSYQCEVSEDAPLFH
TEIRSAHMQVIELPKDDPVMQVDKKVIGVNDNFKAVCTVGPSYPPANITW
SINGNQIRRTPLQRISQDTYEGSTTYSSLDIYPNSQALQGFFETKYQHSV
NLQCVVTIRHMYHKVVAQRIGLNAAPPTTISPNLLGLEGSKRYANGDPDN
SALTGASQRCCICCGAFGAVSLAIFTLAMAHLASFLDH
BO27417.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:18:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| beat-VI-PB | 332 | CG14064-PB | 1..332 | 1..332 | 1731 | 100 | Plus |
| beat-VI-PA | 332 | CG14064-PA | 1..332 | 1..332 | 1731 | 100 | Plus |
| beat-Ia-PA | 427 | CG4846-PA | 11..182 | 36..207 | 350 | 40.7 | Plus |
| beat-Ia-PB | 437 | CG4846-PB | 11..182 | 36..207 | 350 | 40.7 | Plus |
| beat-Ic-PC | 534 | CG4838-PC | 17..233 | 3..227 | 332 | 32.6 | Plus |
