BO27424.complete Sequence
1510 bp assembled on 2010-08-18
GenBank Submission: KX795515
> BO27424.complete
GAAGTTATCAGTCGACATGTTAACTATCAATTTGTTACTGGCGGTCGGAG
CTCTTTTTTGGATTTATTTCTTATGGAGTCGCCGAAGGTTATATTTCCTG
ATGCTAAAGATTCCCGGACCCATAGGACTACCCATTTTGGGTAGCTCCCT
GGAAAATATCATCACCTATAAACGTAAACTAAGCTTTCGAACAAAGTATT
TGAATAAGTACGGCTCGACTATTTTAACGTGGATGGGTCCGGTGCCATTT
ATAGTGACACGAGATCCGAAAGTCGTTGAGGATATCTTTTCGTCTCCTGA
TTGCCACAACAAGAGCCAGCATATTGTGAATGCCATAACTTCTTGTATGG
GAAATGGATTGCTGGGAAAACAAGATCCTCATTGGCTTGATCGCCGCAAG
CACTTTAACCCATCGTTTAAACAGGATCTTTTGCTTAGCTTCTTTCACAT
TTTCGATGCCGAGACGAAAGTCCTGATGAATTTACTAGATACTTATGTCG
ACAAAGGCGAAATAGATGTGGTTCCAGAGATGCTTAGATGGTCTTTTAAA
ATAGCCGCCCAAACCACAATGGGTTCTGAAGTTAAACATGATGAGCACTT
CAAAAATGGCAGCCTCGTGGAAAGCTTCGAATCGCTCATATCTCATTCGA
CTCTCAATATATTGATGCCCTTGGTTCAAAACAGGATGATTTCAAAAATA
TGCGGTTATGATAAGTTACGAGCTGACAACTTTTCTAGAATTCAAAAAAT
GTTGGACAACGTGGTTAATAAAAAAGTCAATCCATTGCCAAAGACTGATT
CAGATCCCGAATCGAACATTGTGATCAATAGGGCAATGGAACTGTACCGT
AAAGGCGATATCACCTATATGGATGTGAAGAGCGAATGTTGTATAATGAT
TGCCGCCGGCTATGATACATCAGCTCTAACAGTTTATCACGCACTCTTCC
TACTGGCCAATCATCCCGAGCACCAGGAAGCGGTCTTTGAGGAGCTAAAT
GGTGTCTTCCCAGATGCCGGACACTTTGGAATAACATACCCAGATATGCA
GAAACTGGACTACTTGGAGCGCGTGATAAAGGAGACACTACGCCTGATAC
CTGCTATTCCAATAACAGCAAGGGAAACAAAGAATGATGTTCGTCTCTCG
AATGGAGTTCTCATTCCCAAAGGAGTCGTCATCGGCATCGACATGTTTCA
CACTCACAGAAATCCCGAAGTCTGGGGACCAGATGCAGACAACTTTAATC
CGGATAACTTCTTGGCGGAAAACATGGAACAAAAGCACCCATATGCCTAC
ATTCCATTTGCGAGGGGAAAGAGAAATTGCATTGGGTCAAAATATGCAAT
GATGTCTTCAAAGTTTGCCTTATGCAGAATACTCAGGAACTACAAGATTA
GCACAAGCACTCTCTACAAGGATCTGGTTTATGTGGACAACATGACCATG
AAACTGGCTGAGTATCCTCGACTTAAACTTCAACGACGCGGTGCAAGCTT
TCTAGACCAT
BO27424.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:41:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cyp313a1-RA | 1479 | CG3360-PA | 1..1476 | 17..1492 | 7380 | 100 | Plus |
| Cyp313a2-RB | 1482 | CG10094-PB | 1135..1380 | 1151..1396 | 240 | 73.2 | Plus |
| Cyp313a3-RA | 1479 | CG10093-PA | 39..289 | 55..305 | 190 | 71.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:41:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cyp313a1-RA | 1623 | CG3360-RA | 55..1530 | 17..1492 | 7380 | 100 | Plus |
| Cyp313a2-RB | 1577 | CG10094-RB | 1140..1385 | 1151..1396 | 240 | 73.2 | Plus |
| Cyp313a3-RA | 1777 | CG10093-RA | 196..446 | 55..305 | 190 | 71.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:40:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 14522173..14522747 | 761..1335 | 2875 | 100 | Plus |
| 3R | 32079331 | 3R | 14521338..14521538 | 174..374 | 1005 | 100 | Plus |
| 3R | 32079331 | 3R | 14521601..14521788 | 373..560 | 940 | 100 | Plus |
| 3R | 32079331 | 3R | 14521103..14521264 | 17..178 | 810 | 100 | Plus |
| 3R | 32079331 | 3R | 14522813..14522971 | 1334..1492 | 795 | 100 | Plus |
| 3R | 32079331 | 3R | 14521996..14522131 | 634..769 | 650 | 98.5 | Plus |
| 3R | 32079331 | 3R | 14521850..14521923 | 561..634 | 370 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 02:41:00 has no hits.
BO27424.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-18 15:55:45 Download gff for
BO27424.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cyp313a1-RA | 38..1508 | 22..1494 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:19:36 Download gff for
BO27424.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cyp313a1-RA | 60..1530 | 22..1494 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:16:21 Download gff for
BO27424.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cyp313a1-RA | 60..1530 | 22..1494 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:16:21 Download gff for
BO27424.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 14521108..14521259 | 22..173 | 100 | -> | Plus |
| 3R | 14521338..14521538 | 174..374 | 100 | -> | Plus |
| 3R | 14521603..14521788 | 375..560 | 100 | -> | Plus |
| 3R | 14521850..14521922 | 561..633 | 100 | -> | Plus |
| 3R | 14521996..14522122 | 634..760 | 100 | -> | Plus |
| 3R | 14522173..14522746 | 761..1334 | 100 | -> | Plus |
| 3R | 14522814..14522971 | 1335..1494 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:19:36 Download gff for
BO27424.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 10346830..10346981 | 22..173 | 100 | -> | Plus |
| arm_3R | 10347060..10347260 | 174..374 | 100 | -> | Plus |
| arm_3R | 10347325..10347510 | 375..560 | 100 | -> | Plus |
| arm_3R | 10347572..10347644 | 561..633 | 100 | -> | Plus |
| arm_3R | 10347718..10347844 | 634..760 | 100 | -> | Plus |
| arm_3R | 10347895..10348468 | 761..1334 | 100 | -> | Plus |
| arm_3R | 10348536..10348693 | 1335..1494 | 98 | | Plus |
BO27424.pep Sequence
Translation from 16 to 1510
> BO27424.pep
MLTINLLLAVGALFWIYFLWSRRRLYFLMLKIPGPIGLPILGSSLENIIT
YKRKLSFRTKYLNKYGSTILTWMGPVPFIVTRDPKVVEDIFSSPDCHNKS
QHIVNAITSCMGNGLLGKQDPHWLDRRKHFNPSFKQDLLLSFFHIFDAET
KVLMNLLDTYVDKGEIDVVPEMLRWSFKIAAQTTMGSEVKHDEHFKNGSL
VESFESLISHSTLNILMPLVQNRMISKICGYDKLRADNFSRIQKMLDNVV
NKKVNPLPKTDSDPESNIVINRAMELYRKGDITYMDVKSECCIMIAAGYD
TSALTVYHALFLLANHPEHQEAVFEELNGVFPDAGHFGITYPDMQKLDYL
ERVIKETLRLIPAIPITARETKNDVRLSNGVLIPKGVVIGIDMFHTHRNP
EVWGPDADNFNPDNFLAENMEQKHPYAYIPFARGKRNCIGSKYAMMSSKF
ALCRILRNYKISTSTLYKDLVYVDNMTMKLAEYPRLKLQRRGASFLDH
BO27424.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:18:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cyp313a1-PA | 492 | CG3360-PA | 1..492 | 1..492 | 2595 | 100 | Plus |
| Cyp313a3-PA | 492 | CG10093-PA | 1..491 | 1..491 | 1443 | 53.6 | Plus |
| Cyp313a2-PB | 493 | CG10094-PB | 1..491 | 1..491 | 1334 | 48.5 | Plus |
| Cyp313a5-PA | 487 | CG15807-PA | 1..486 | 1..491 | 1201 | 45.8 | Plus |
| Cyp313a4-PA | 494 | CG6802-PA | 1..493 | 1..491 | 1085 | 41.5 | Plus |
