BO27485.complete Sequence
1492 bp assembled on 2010-08-18
GenBank Submission: KX797673
> BO27485.complete
GAAGTTATCAGTCGACATGACGATAAAATCGTTCAACTTGGTGGTAAAGG
GTCCCATGTGGGGCGTTCGCCACCTGCAGGTACTGTTCCTCTTTCTGTGC
GCCACCTTGATCGTGGCCCAGAGGTTCAACATGAGCGTGGCCATTGTGGC
CTTTACGAATGCCAATAGCAGCAACCCAAATTATCCGGAATACCGACTGA
CAGAGCCTCAGAAGTCGTACACCATCAGCAGTCCCTTCTGGGGCTCCTGC
TGCACCCAGATGATGAGTGGATACCTATCGAGTCGCTTTGGAGCCAAGGT
GCTGCTGCTGACCATCATGTTGCTCACCGCTCTGCTCAGCATTGCCACGC
CCTTCGCCTTGGCCTGGGGCGGCTGGCAGCTGCTCTTCTGGGTGCGATTC
GTCCAGGGACTCGCCATGGGCGGCATGTGGCCCTGCCTGTACACCCATCT
GGCCAAGTGGTGTCCCAAGAAGGAGGCCAATCGCATGGGCGGCATCATGA
CCACTGGCTTGGATTGTGGGACAATAATGGGATTCGCTTTGAGTGGCGTA
CTCTCTGCATCGCCCCTCGGGTGGCCCAGCACATTCTACGTGCCAGGATA
CTTAGGCATCGTGTGGTGCCTTACTTTCTTGCGATATGGCGCCAACAGCC
CATCCGAATCGAAATTCATTTCTCTGGCGGAACGAAAGCACATTCAATTT
GCCCTCGAGCAGAATCAGGTGATTCGCGGTGCAACTCCTCCAGTACCGTG
GCTCCAGATCCTCACCTCTCGTCCATTTATCGTCCTGGCGTTTTGCAAAA
TGAGCCAGGCGTGCAGCTTCTACACGCTGATGCAACAGATTCCGCGCTAC
ATCCACGGTATATTCCACTACAGCATTGCGGCAAATGCCCTGCTCTCAGC
TCTGCCCTTTGTGGTCATGCTGATGTCATCCTACGGATTCATTTTCCTGG
CTGAATACCTAACCCGTCGTCGAGACATTTCATTGCCTATCCTACGGAAG
ACCATTAATTCCTTTGCCACATGGACCCCTGCTGTAGCCCTGGTTATCCT
ATCCTACGTCAGCGATCAGAATGTGGTGGGCAGTATGTTTTGTCTGATTG
CAGCCACAGCTGCCATTTCCGGACAGGCCATTGGCAGTTCCCTTAACCAC
GTGGACTTGTCGCCAAACTTTGCTGGACTCCTGTTTGGGATGAGCAACAC
ACTGATGTCTGCGGCTGGTGTGATATCGCCAATCGTCATTGGGCTGACCG
TAACCAAAGAGTCGGATCGATCGCAATGGCGAACAGTTTTCCTTGGCATT
TCGGTGATTCTGTTCCTCGGCAACTTGATGTACCTAATCTTTGGTCAAAT
GACCGTCCAGTCCTGGAATGATTCCCCATCCAAAGAGACCGAAACAGAAG
CATCACCAAAGCCCCAGGCATCGGCTCCCTCAGTTGCCGAGGAAACGATA
TCCGTCGAGAGATTTAACTATTTGGCAAGCTTTCTAGACCAT
BO27485.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:41:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3649-RB | 1461 | CG3649-PB | 1..1458 | 17..1474 | 7290 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:41:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3649-RB | 1569 | CG3649-RB | 41..1498 | 17..1474 | 7290 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:41:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 22846910..22847577 | 594..1261 | 3340 | 100 | Plus |
| 2R | 25286936 | 2R | 22846112..22846659 | 50..597 | 2740 | 100 | Plus |
| 2R | 25286936 | 2R | 22847626..22847840 | 1260..1474 | 1075 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 02:41:17 has no hits.
BO27485.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-18 15:55:51 Download gff for
BO27485.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3649-RA | 1..1419 | 56..1476 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:19:43 Download gff for
BO27485.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3649-RB | 41..1498 | 17..1476 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:16:26 Download gff for
BO27485.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3649-RB | 41..1498 | 17..1476 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:16:26 Download gff for
BO27485.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 22846017..22846050 | 17..50 | 100 | -> | Plus |
| 2R | 22846113..22846658 | 51..596 | 100 | -> | Plus |
| 2R | 22846913..22847577 | 597..1261 | 100 | -> | Plus |
| 2R | 22847628..22847840 | 1262..1476 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:19:43 Download gff for
BO27485.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 18733540..18733573 | 17..50 | 100 | -> | Plus |
| arm_2R | 18733636..18734181 | 51..596 | 100 | -> | Plus |
| arm_2R | 18734436..18735100 | 597..1261 | 100 | -> | Plus |
| arm_2R | 18735151..18735363 | 1262..1476 | 99 | | Plus |
BO27485.pep Sequence
Translation from 16 to 1492
> BO27485.pep
MTIKSFNLVVKGPMWGVRHLQVLFLFLCATLIVAQRFNMSVAIVAFTNAN
SSNPNYPEYRLTEPQKSYTISSPFWGSCCTQMMSGYLSSRFGAKVLLLTI
MLLTALLSIATPFALAWGGWQLLFWVRFVQGLAMGGMWPCLYTHLAKWCP
KKEANRMGGIMTTGLDCGTIMGFALSGVLSASPLGWPSTFYVPGYLGIVW
CLTFLRYGANSPSESKFISLAERKHIQFALEQNQVIRGATPPVPWLQILT
SRPFIVLAFCKMSQACSFYTLMQQIPRYIHGIFHYSIAANALLSALPFVV
MLMSSYGFIFLAEYLTRRRDISLPILRKTINSFATWTPAVALVILSYVSD
QNVVGSMFCLIAATAAISGQAIGSSLNHVDLSPNFAGLLFGMSNTLMSAA
GVISPIVIGLTVTKESDRSQWRTVFLGISVILFLGNLMYLIFGQMTVQSW
NDSPSKETETEASPKPQASAPSVAEETISVERFNYLASFLDH
BO27485.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:19:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3649-PB | 486 | CG3649-PB | 1..486 | 1..486 | 2525 | 100 | Plus |
| CG9826-PC | 495 | CG9826-PC | 7..472 | 11..474 | 996 | 40.8 | Plus |
| CG9826-PA | 495 | CG9826-PA | 7..472 | 11..474 | 996 | 40.8 | Plus |
| CG9825-PA | 485 | CG9825-PA | 7..481 | 11..484 | 949 | 38.7 | Plus |
| CG30272-PA | 497 | CG30272-PA | 8..455 | 12..454 | 943 | 39.2 | Plus |
