BO27491.complete Sequence
3082 bp assembled on 2010-09-22
GenBank Submission: KX798911
> BO27491.complete
GAAGTTATCAGTCGACATGAATGAAGGCTTCGAACCTGCAACGCATGGCA
TCAGCAAAACGGACGGAAGCTGCATCAGCCACCACAGTCAGAGCAACGGG
AACGGAATCGAAGGCGTCAACGGAGGCGGAATCGTCGGCCACCATCTCGG
TGGAGTCCTGCGCACCACTGACCTGGCCAGCGGGGCCATGGAATGCCTGC
CGATGAGCAGTGCTGCCCATCACCCACATCTGATGGCGGGTGCATCGGCG
GTAGGAGCCGTTTCCGCCTCTCCCACGGCGACCGTGGTGGTGGGTGCCAC
GTATCCGCACCACCTGCACCACCACCACTTGAGCCACCACACGCCGTACA
GCAATAGCTACGGGAGCCACCACATACACAGCGAGCAAACCAAGTCGCTG
CAGGAGCTGCAGCACGAGGTTGGCGCTCTGCTGGAGTTCCGGGACCTGGT
CATAGAAACTTTTCCCGACCTCAAGCACAAGATGGCCTCCATGTCCGCAA
CGCCCTCGACTCCCACGTCTTCGGTGGGTGCCATCGGTGGCAGTCACTCG
GTAGGTGGCGGCAGCTCCTCTCTGGCCACCAGCAGACGTGAGTGGGAGCC
GGGCATACGGATGAAGCGAAAACAGTCGCACAAAGAACCGTCCACGTCGT
CAGCGGCAGCTGCTCCTTCCTCCGGAGCTGAGGCGTCGTCCTCGTCGCTG
ACACGCAGCCGTAGCAACTCGCACAGCGGCAAGAAAGAGCCAAAGAGCGG
AGAGAACAACAACGGAAGCGTTGTGCAAGACTCCGGCTTCTCAACGGAGA
CCAGTTCCTCCAAGGAGGGCCACAGTGCCTCCTCCACCAACGGTGCTATG
ACGGTGGCCATAGCAGCGAATCGCCTGAGCTGCGCGGAATCGGACGATGA
GTTGCTCAACCTGCTGGACGTTATTCACCGCAAGTCCAATCGATTACGCG
AGGAAGTGGAGCACTTGCAGAGCTATGAGCGCCAGCACGGGGATGCTCAG
AAGACAGGAGGCGAAGGCCAGGGTGCGAGCAAGGAGGGAATGACAGCGCA
GCAGTTCCGAGAGCAGGTGGAGCGATTAAATCGCGAGGATATCAAACAGC
TGCGCAAGGAGCGCGACCGTCTGCTTGACAAGTTGGCCGAAATGGAGGCG
GAAACGCTGACCGGACGCATTAAGGCGGCCAAGATGAGCGACCAGGTGGA
GGAGTTGGTAGGAGTGAAGAAAGATCTCGAGGAGCAGCTGAAACTGGCGA
TGGCCCAAAAGCTAGAGTTGAGCTCGCGGGTGCAACAGTTGCAGCAGCAG
CAGCAAAGTAAAAGCTCTTCCAGCGGCAGTCAGTCGGATTACTCCAGTCA
ACGCAACTTTCTATCCTCAGCTACCACGGTGCTCTCCAATGGCAGTCGTC
CTAGCAGCAACGTCATCAGCAATAACACATTCCAGCCGGTCGTACTTGAT
CAGCCAGCGCAGGAAGCATTCCATCAAAGCCCAGGCAGTGATATTCCATT
GAGAAAACAGCAACAGCAATCCTTGGGACGTCTTGATGGCATCGTTAGCA
CGCCCGGAACGCGCAACTCCAAGTGCCGTTTGACCGACTCCAAGCGATTT
GCGGCCATTTTGTTGGAAACTAATGTATTGGAGCTGCAGCGCCACTTGCT
CACCCTCACCGTGCAGAACCAGGTGCTGGCCCAAAAGCTGGAATCGTCCA
GCAAGTCCAAGACGCTGCTGGCCAAGCGGCTGGACAAAAACAGCGAGGAG
TTCGAACATTTGCGCTACCAGCTGGAGGAGAAGAATATTGAGCTTGAGGG
CACCAAGGCGCAATTGCGGCTGGTAGAGTCTCGTCTGCAGGCGAGCAATA
GCACCAGCAACTCGTATCTGCACTCCTCACAGCACGACTACGAGACCAAT
CGCTCTTCGGCTTCCACCACGCTAATGCTGAGTCGTCGTGGAGTTTCCGA
TTCGGTGGACTCTACCTCGACGGCTATGCCTGCCCCGCCAGTCACACAGA
TCAGTACGCCCAGCATGAAGGCCATGGTGCCGCTGGCCATGGATGAGCTG
CAGCAGCACAGTAGTAGCACGGAGTCGGCGCACGAACACGAGAATCAAGG
GCTTCAAACACCCAACAGCACCAGCTCTCCCCTCAGTAAGACGATCATAA
ATGCAAGTCCCTGTCCGGTGGGAAGCAGTACGCCCAGTAATATAGCTGCC
CGTGTGATGAGCATCAGCGTGGGTGGAGTGAGTCCGTTTGAGGCCATGAC
TCCTCCGCCGCGACAAAATGCGTTCCGAAAGTTTGGAAGTGCCAGCAAGC
CCAGCAAGATTCCGTTGCCGGGCAGCAAGGCGGCGGCCTATTTTTCGGGC
AAACCGCCAACGGGAAGACCGTCGACGGCGGGAAGATCTCCTCCATCGGC
GAACAATTCAAGTAGCACCTCGTATGGCAGTAAATCCTCGTTGAGCAGAA
GTACGGGAAATTTGCAGAGCCTGCGAAGAGCAGAGACGTCCGCCTCCAAT
CACTCGCTGAGTACGAATACGAGCCGGAGTTCTACTTCCTCTTCGATACC
GCTGGCCACCACACCTTACTCATCCGGCTCGACTGGCAATCGCAGCCAGC
CGACAGCCGCAACGACTCCGTCCCCGCGTGTGCTCCAGAACTCACCGCTG
CCCAAGCTGAAGCGGGATACGATCAGCTCGAGGGTGCGTCATCTGGACTC
CCTGTCACGTGCCCAGCAGACGCCGGAGGGCCTGAAGGGTACCACCACCA
ACTCCACCTCCATTGCCGCTCAGCTGAGCTCGACTCTGCGCAAAGATCTC
CAGCTGAGTGGAAACGGGACCGGAGCTCCCTATAATCAGCACCACCTGAA
TCACAGGCGCAGTGGTCACTCGCCGGCCTCGAACTCCTCTGGCAGCGGCG
TGTCCAGGCGTTACAGTAGTGCCTCGACTGGGGGGTCCGGTGGTCGAGCC
ATCGGCCGGGATCAGGGTGAGCCCACCACGCCCACATCCAGCTATGGCGG
CGACAGTGATAGTGGCAAGATACAAGCCACTTATCCTAACAAACGCCAGG
CTACACTGAGAAAAGCAAGCTTTCTAGACCAT
BO27491.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 07:58:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| jvl-RA | 3462 | CG43162-PA | 410..3459 | 15..3064 | 15235 | 100 | Plus |
| jvl-RD | 3948 | CG43162-PD | 410..3415 | 15..3020 | 15015 | 100 | Plus |
| jvl-RF | 3456 | CG43162-PF | 410..3418 | 15..3023 | 15015 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 07:58:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| jvl-RA | 6436 | CG43162-RA | 1006..4055 | 15..3064 | 15235 | 100 | Plus |
| jvl-RB | 3237 | CG43162-RB | 73..3117 | 20..3064 | 15225 | 100 | Plus |
| jvl-RE | 4993 | CG43162-RE | 208..3252 | 17..3064 | 15160 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 07:58:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 14789554..14791256 | 1321..3023 | 8500 | 99.9 | Plus |
| 3R | 32079331 | 3R | 14788056..14788619 | 19..582 | 2820 | 100 | Plus |
| 3R | 32079331 | 3R | 14789025..14789495 | 853..1323 | 2355 | 100 | Plus |
| 3R | 32079331 | 3R | 14788693..14788968 | 580..855 | 1380 | 100 | Plus |
| 3R | 32079331 | 3R | 14793441..14793487 | 3018..3064 | 235 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 07:58:25 has no hits.
BO27491.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-09-22 18:49:48 Download gff for
BO27491.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3563-RA | 1003..4046 | 17..3060 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:30:19 Download gff for
BO27491.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| jvl-RA | 1003..4046 | 17..3060 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:08:12 Download gff for
BO27491.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| jvl-RA | 1008..4051 | 17..3060 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:08:12 Download gff for
BO27491.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 14788055..14788619 | 17..582 | 99 | -> | Plus |
| 3R | 14788696..14788966 | 583..853 | 100 | -> | Plus |
| 3R | 14789026..14789495 | 854..1323 | 100 | -> | Plus |
| 3R | 14789557..14791252 | 1324..3019 | 100 | -> | Plus |
| 3R | 14793443..14793483 | 3020..3060 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:30:19 Download gff for
BO27491.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 10613777..10614341 | 17..582 | 99 | -> | Plus |
| arm_3R | 10614418..10614688 | 583..853 | 100 | -> | Plus |
| arm_3R | 10614748..10615217 | 854..1323 | 100 | -> | Plus |
| arm_3R | 10615279..10616974 | 1324..3019 | 100 | -> | Plus |
| arm_3R | 10619165..10619205 | 3020..3060 | 100 | | Plus |
BO27491.pep Sequence
Translation from 16 to 3082
> BO27491.pep
MNEGFEPATHGISKTDGSCISHHSQSNGNGIEGVNGGGIVGHHLGGVLRT
TDLASGAMECLPMSSAAHHPHLMAGASAVGAVSASPTATVVVGATYPHHL
HHHHLSHHTPYSNSYGSHHIHSEQTKSLQELQHEVGALLEFRDLVIETFP
DLKHKMASMSATPSTPTSSVGAIGGSHSVGGGSSSLATSRREWEPGIRMK
RKQSHKEPSTSSAAAAPSSGAEASSSSLTRSRSNSHSGKKEPKSGENNNG
SVVQDSGFSTETSSSKEGHSASSTNGAMTVAIAANRLSCAESDDELLNLL
DVIHRKSNRLREEVEHLQSYERQHGDAQKTGGEGQGASKEGMTAQQFREQ
VERLNREDIKQLRKERDRLLDKLAEMEAETLTGRIKAAKMSDQVEELVGV
KKDLEEQLKLAMAQKLELSSRVQQLQQQQQSKSSSSGSQSDYSSQRNFLS
SATTVLSNGSRPSSNVISNNTFQPVVLDQPAQEAFHQSPGSDIPLRKQQQ
QSLGRLDGIVSTPGTRNSKCRLTDSKRFAAILLETNVLELQRHLLTLTVQ
NQVLAQKLESSSKSKTLLAKRLDKNSEEFEHLRYQLEEKNIELEGTKAQL
RLVESRLQASNSTSNSYLHSSQHDYETNRSSASTTLMLSRRGVSDSVDST
STAMPAPPVTQISTPSMKAMVPLAMDELQQHSSSTESAHEHENQGLQTPN
STSSPLSKTIINASPCPVGSSTPSNIAARVMSISVGGVSPFEAMTPPPRQ
NAFRKFGSASKPSKIPLPGSKAAAYFSGKPPTGRPSTAGRSPPSANNSSS
TSYGSKSSLSRSTGNLQSLRRAETSASNHSLSTNTSRSSTSSSIPLATTP
YSSGSTGNRSQPTAATTPSPRVLQNSPLPKLKRDTISSRVRHLDSLSRAQ
QTPEGLKGTTTNSTSIAAQLSSTLRKDLQLSGNGTGAPYNQHHLNHRRSG
HSPASNSSGSGVSRRYSSASTGGSGGRAIGRDQGEPTTPTSSYGGDSDSG
KIQATYPNKRQATLRKASFLDH
BO27491.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-26 14:33:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| jvl-PA | 1153 | CG3563-PA | 139..1153 | 2..1016 | 5122 | 100 | Plus |
| jvl-PF | 1151 | CG43162-PF | 139..1140 | 2..1003 | 5050 | 99.8 | Plus |
| jvl-PD | 1315 | CG43162-PD | 139..1138 | 2..1001 | 5046 | 100 | Plus |
| jvl-PB | 959 | CG3563-PB | 1..959 | 58..1016 | 4820 | 100 | Plus |
| jvl-PC | 958 | CG3563-PC | 1..958 | 58..1016 | 4804 | 99.9 | Plus |
