BO27503.complete Sequence
1948 bp assembled on 2010-09-13
GenBank Submission: KX800016
> BO27503.complete
GAAGTTATCAGTCGACATGGAGATGCAAAGCTACTCTGGTCGTGGACCAT
CGACAGGCACATCAGAAACAGCAACAGCAACAGCAGCAGTTGCATCTGCA
TCTGCATCAGACACAGCAGCAACATTCACACTGCGACACTTCAATTGTCG
GCTGGAAGAGGCGGATTGGCCTGGGCCTCGCCAGCCGTTTATTGACTGCG
AAGGCAGCCACACCAACAGCACATCCTACACCCCCAGCAGCCTGCCCACC
AGCAAAAACCTCATCGAGGGACCCAACAACACATTCCAGTGTGCACGGCA
AGCTATCGACGAAGCGGAGCACAACGCATTCTATAGTTGCGATGGGGAAA
GCCCATTGTCTGAAAACTGCACTTTGAGGCTGAAGGCGCGACTGTTGCGA
TGGCCGTACGAGGCGTATGAGCACATTCGACTGGCAATCAACGGGGCACT
CAGTGATTATGCTAGTGATAAACTTAGTGATAGTTCGAGCTGCGATGAAG
GAGGCATGGTGTTGCAATGTAAGCTGGGCCAGGCCCATGAACTATTGCTT
TGTCATTTGCAACAACTCGAGAGGGAGCCACTGCGGGAGGTGGGAAGCGC
GGAGGAGAGCTTCTCCAACGACAGCCTTCTGCAGGCCTTTCAAATCGAAC
TGGGCGCAGAGCGCGATGGACTCTGGTCCTTCCTTAATCTAAGCGAGCTA
ATGGAGCCCGATCACGGATTCCTGGGCATCATGAATGTCACCAACACTAG
CTTAGACATGTTTTTGCCGAACCTTACAGCCCTGAACACGACCTCCACGG
CCTCCACTGCAGACATGGCCACCGAGTTCGCGGTAACAAAGAGCTTTCTG
GACTACAGTCCCCACGGCTACGATTTCCTATTCCTGTTCGTGGTGTTCTT
TATCTTCGCGGGTGGCCTGGGTAATATCCTTGTGTGCCTAGCCGTTGCCT
TGGACCGGAAACTGCAGAATGTGACTAACTACTTCCTGTTTTCCCTGGCT
ATAGCCGATCTCCTGGTCAGTTTGTTTGTGATGCCCATGGGCGCGATACC
AGCTTTTTTGGGGTATTGGCCACTTGGCTTTACCTGGTGCAACATTTATG
TGACGTGTGACGTACTGGCCTGCTCATCCAGTATATTGCACATGTGCTTC
ATCAGTTTGGGACGCTATATGGGAATAAGAAATCCATTGGGCTCGAGGCA
TCGATCTACGAAACGATTGACTGGTATAAAGATAGCCATTGTTTGGGTAA
TGGCCATGATGGTATCCAGTTCAATAACCGTTCTTGGTCTGGTCAATGAG
AAGAACATAATGCCCGAGCCTAACATATGCGTTATCAACAATCGCGCCTT
TTTCGTGTTTGGATCTCTGGTAGCTTTTTATATACCCATGCTGATGATGG
TTACCACATACGCATTGACGATTCCCCTCCTCCGGAAGAAAGCGCGATTT
GCCGCCGAGCACCCGGAAAGTGAACTTTTTCGCAGGTTGGGTGGACGCTT
CACCCTAAGGCCGCAGCACAGCCAGCAGCAGTTGCAGATGTTCAGTAGCT
TTTCTGGCAGCAATAACAAATTCCTATCAATGGGCGACGGCAATCGCAAC
TTCAACACTGAAGGAGAGATGGAGGAGGGTGGAGCTCCTAGCAGAAGGAG
TGGCGTAGAGCCCGCCGAACGACCTTTGATGCAACAGCGAACGGCGAGCA
GCAGGAGCATGGGCACGGTTAGTTTCCGTAATGTCGTGAACGGGACTAGC
GGAGCCGCAGGAAGTGGGCGCAGGACGACTGGCACTGCCCACAGCAGCTT
CCGGTTCTCTGGCGCCGGCATCTTTCGGCACTCGTCGTCGTCTCCCGCCT
CGAGCTGCCACTCCACCAGCACGTCGCGTTCGAGCTCCTTCTGGCGCAAA
CACGGCGGCTATCCAAACCTAATGGACAGGGCAAGCTTTCTAGACCAT
BO27503.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 08:14:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 5-HT2A-RD | 1917 | CG1056-PD | 1..1914 | 17..1930 | 9570 | 100 | Plus |
| 5-HT2A-RH | 2754 | CG1056-PH | 1..1913 | 17..1929 | 9565 | 100 | Plus |
| 5-HT2A-RF | 2751 | CG1056-PF | 1..1913 | 17..1929 | 9565 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 08:14:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 5-HT2A-RD | 3178 | CG1056-RD | 553..2466 | 17..1930 | 9570 | 100 | Plus |
| 5-HT2A-RH | 3683 | CG1056-RH | 553..2465 | 17..1929 | 9565 | 100 | Plus |
| 5-HT2A-RF | 3541 | CG1056-RF | 414..2326 | 17..1929 | 9565 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 08:14:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 4622580..4623625 | 17..1062 | 5230 | 100 | Plus |
| 3R | 32079331 | 3R | 4627903..4628350 | 1483..1930 | 2240 | 100 | Plus |
| 3R | 32079331 | 3R | 4626965..4627199 | 1054..1288 | 1145 | 99.1 | Plus |
| 3R | 32079331 | 3R | 4627258..4627459 | 1286..1487 | 1010 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 08:14:04 has no hits.
BO27503.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-09-16 10:43:19 Download gff for
BO27503.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 5-HT2-RD | 548..2461 | 17..1932 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:24:14 Download gff for
BO27503.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 5-HT2-RD | 553..2466 | 17..1932 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:13:44 Download gff for
BO27503.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 5-HT2A-RD | 553..2466 | 17..1932 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:13:44 Download gff for
BO27503.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 4622580..4623624 | 17..1061 | 100 | -> | Plus |
| 3R | 4626973..4627197 | 1062..1286 | 100 | -> | Plus |
| 3R | 4627259..4627457 | 1287..1485 | 100 | -> | Plus |
| 3R | 4627906..4628350 | 1486..1932 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:24:14 Download gff for
BO27503.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 452695..452919 | 1062..1286 | 100 | -> | Plus |
| arm_3R | 452981..453179 | 1287..1485 | 100 | -> | Plus |
| arm_3R | 448302..449346 | 17..1061 | 100 | -> | Plus |
| arm_3R | 453628..454072 | 1486..1932 | 99 | | Plus |
BO27503.pep Sequence
Translation from 16 to 1948
> BO27503.pep
MEMQSYSGRGPSTGTSETATATAAVASASASDTAATFTLRHFNCRLEEAD
WPGPRQPFIDCEGSHTNSTSYTPSSLPTSKNLIEGPNNTFQCARQAIDEA
EHNAFYSCDGESPLSENCTLRLKARLLRWPYEAYEHIRLAINGALSDYAS
DKLSDSSSCDEGGMVLQCKLGQAHELLLCHLQQLEREPLREVGSAEESFS
NDSLLQAFQIELGAERDGLWSFLNLSELMEPDHGFLGIMNVTNTSLDMFL
PNLTALNTTSTASTADMATEFAVTKSFLDYSPHGYDFLFLFVVFFIFAGG
LGNILVCLAVALDRKLQNVTNYFLFSLAIADLLVSLFVMPMGAIPAFLGY
WPLGFTWCNIYVTCDVLACSSSILHMCFISLGRYMGIRNPLGSRHRSTKR
LTGIKIAIVWVMAMMVSSSITVLGLVNEKNIMPEPNICVINNRAFFVFGS
LVAFYIPMLMMVTTYALTIPLLRKKARFAAEHPESELFRRLGGRFTLRPQ
HSQQQLQMFSSFSGSNNKFLSMGDGNRNFNTEGEMEEGGAPSRRSGVEPA
ERPLMQQRTASSRSMGTVSFRNVVNGTSGAAGSGRRTTGTAHSSFRFSGA
GIFRHSSSSPASSCHSTSTSRSSSFWRKHGGYPNLMDRASFLDH
BO27503.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-26 14:27:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 5-HT2A-PD | 638 | CG1056-PD | 1..638 | 1..638 | 3322 | 100 | Plus |
| 5-HT2A-PB | 930 | CG1056-PB | 1..638 | 1..638 | 3322 | 100 | Plus |
| 5-HT2A-PA | 868 | CG1056-PA | 1..638 | 1..638 | 3322 | 100 | Plus |
| 5-HT2A-PH | 917 | CG1056-PH | 1..637 | 1..637 | 3317 | 100 | Plus |
| 5-HT2A-PF | 916 | CG1056-PF | 1..637 | 1..637 | 3317 | 100 | Plus |
