BO27516.complete Sequence
2206 bp assembled on 2010-09-22
GenBank Submission: KX797449
> BO27516.complete
GAAGTTATCAGTCGACATGATACCAAAAAAGACGACGGTTAAGGATTCAC
ACATTGTGAAAATAGCCGTGGAGCGAGAGGACCATATAGCGCAGTTGATA
AATCTGGATCAAAGGCATCCGCTGGCAAGTAAAATCCAGGAAATTTGCAA
TGGTTGGTCCATCAGCGATCACCAGAACTATGCACTCCAGTTCTACGAGC
CCACTAACCGAAAGTACGTGACCGAAAAGAATCGCAATGAGATCAAGAAT
GGCTCCGTACTGCAGCTGCAGTATTCGCCATCCAAGACTGCCTGCGATGC
CATGGAGGTGCTGCTCAATGGCAGTCCACAGGAGAAGGCGCTGCGTCTAA
AGGAGCTCACTTCCCTAAGCACCGATCACACATTTGCCCTGGAGTTCATC
AAGGAGAAGGGTCTCGACACACTCATTAAGATGATTGAGGATGGCGGCCA
GACCAACGAAGACATTCTGAAATACAGCCTGGCCAGCTTTGTGGAGCTGA
TGGAGCACGGCACGGTGTCCTGGGAGGTGCCGGAAAACTCATTCGTGGCC
CGCAACATTGAGATCGTGCGAAACTTTCAGAAATATCCTACGAACTGTGG
TGAGAGCGCCCTGTCCAACTTGGAGAACATTGTTATGTGCAGCAATAAAC
ATGTGCTTGTTGCCGAGGACATCAAGCTGCAGGATATTCTCCGATTGCTT
CAGGATGTCAATTCGCCGGTGATGCGACAAAATGCCATAGCCCTGCTGAA
CGCTCTGTTCGTCAAAGCAGACGAGGGCCGCCGCAGGACCATTGCTCAAA
CTATTAGTGCCAAGCAGTTCCGCCTGGCCCTTATCGGCAATGGACTGGGC
ACAGAGATGACCCACCAGCTGTACGTGCTGCAAACGTTGACTCTCGGCCT
GTTGGAGAAGCGCATGCGTATGAAGATGAACGCGCAGGACCAGGACGCGC
ACGAGAAGATCAAGGAGCTGCGGCGCATTGCCTTCGACGATAATACCAAC
GCTTTGAATCAAAACGACGATCACATCCGTCGTGGCGGTGGCTCCGGAGC
TGGCAATGTCAACTTCTCGCAGTACTACAAAAAGCTGGGCTTCAAGTGCG
ATATTAACCCTGCCCAGGATTTCATTGAGACGCCGCCGGGTATATTAGCG
TTGGATTGCATGGTGTATTTTGCACGCAACTACACGCAACAGTATGCGAA
GATCGTCAGGGAGAACTCCTGCCGTGCGGATGAGCACGAGTGTCCCTTCG
GACGCACCTCCATCGAATTGGTCAAGGTGCTATGTGACATCCTTCGCATC
GGCGAGCCACCAGCCGAGCAATCCGGTGACTTTCAGCCCATGTTCTTTAC
GCACGATTCGCCGTTCGAGGAATTCTTTTGCATATGCGTCATTACGCTGA
ATCGCACATGGAAGGATATGCGTGCCACTGCCGAGGACTTCAGCACAACC
TTCAGCGTGGTGCGGGAGCAGATCCAGCGCACTCTAAAGGGCAGACCCGA
GAACCTGGACGATTTCCGAAACAAGATCGCTTTGTTGACCTATCAGCAGA
TCACAACACTGCGCCAGCAGGAGCGCACTTCGAAGGAGGAGTGTGATTCC
ACAGCTTCGGCGATTGTTAAGCTCAAAGAGAAGATATCACCGCAAATTCT
TGAGCTAATCAAGCAGCAACGGCTCTCTTTTCTGGTGGAAGGTACACATT
TTGCAAAATACTTGCGAGGCACTCGAACAAAGGACAAGTTCTGGTACGCT
CGTCTTTCGCCGAATCACAAGGTGATTCATTACGGAGATTGCGACGAGAA
GACAATACCCACCATGGAGGAGTTGCCCAAGAAACTGCCCATCAGTGAGA
TTAAGCAATTGCTAGAGGGCAAGGAATGCCCGCATATGAAGGAAACTCGC
ATTCGGAAATCGGCGGTAAACCTGGCCTTTTCCATCACCTTCGAAAACAT
GGAGCACTCTACGTTGGACTTTGTGGCACCCGACGAAAGCATATTCAACT
ACTGGACGGATGGAATAAACGCGCTGCTGGGTCAACCGATGGTCAGCAAG
CAAAAGAACGAGGACTTCGACACTCTGCTGTCGATGGAGATCAAATTGCG
CCTGCTGGACACGGAAGGTGTGGACATCAGCAAGGACCCACCGCCAATAC
CGGAGGATCCCGAAAACTATGATTTTTGCTTTGAGAGCGCAAGCTTTCTA
GACCAT
BO27516.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 07:58:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ced-12-RA | 2175 | CG5336-PA | 1..2172 | 17..2188 | 10860 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 07:58:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ced-12-RA | 2586 | CG5336-RA | 114..2285 | 17..2188 | 10860 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 07:58:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 12098347..12099369 | 120..1142 | 5085 | 99.8 | Plus |
| 2L | 23513712 | 2L | 12099426..12099983 | 1139..1696 | 2790 | 100 | Plus |
| 2L | 23513712 | 2L | 12100040..12100538 | 1690..2188 | 2495 | 100 | Plus |
| 2L | 23513712 | 2L | 12097951..12098064 | 17..130 | 570 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 07:58:47 has no hits.
BO27516.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-09-22 18:49:50 Download gff for
BO27516.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ced-12-RA | 109..2280 | 17..2190 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:30:23 Download gff for
BO27516.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ced-12-RA | 114..2285 | 17..2190 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:08:20 Download gff for
BO27516.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ced-12-RA | 114..2285 | 17..2190 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:08:20 Download gff for
BO27516.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 12097951..12098062 | 17..128 | 100 | -> | Plus |
| 2L | 12098356..12099366 | 129..1139 | 100 | -> | Plus |
| 2L | 12099427..12099978 | 1140..1691 | 100 | -> | Plus |
| 2L | 12100042..12100538 | 1692..2190 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:30:23 Download gff for
BO27516.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 12097951..12098062 | 17..128 | 100 | -> | Plus |
| arm_2L | 12098356..12099366 | 129..1139 | 100 | -> | Plus |
| arm_2L | 12099427..12099978 | 1140..1691 | 100 | -> | Plus |
| arm_2L | 12100042..12100538 | 1692..2190 | 99 | | Plus |
BO27516.pep Sequence
Translation from 16 to 2206
> BO27516.pep
MIPKKTTVKDSHIVKIAVEREDHIAQLINLDQRHPLASKIQEICNGWSIS
DHQNYALQFYEPTNRKYVTEKNRNEIKNGSVLQLQYSPSKTACDAMEVLL
NGSPQEKALRLKELTSLSTDHTFALEFIKEKGLDTLIKMIEDGGQTNEDI
LKYSLASFVELMEHGTVSWEVPENSFVARNIEIVRNFQKYPTNCGESALS
NLENIVMCSNKHVLVAEDIKLQDILRLLQDVNSPVMRQNAIALLNALFVK
ADEGRRRTIAQTISAKQFRLALIGNGLGTEMTHQLYVLQTLTLGLLEKRM
RMKMNAQDQDAHEKIKELRRIAFDDNTNALNQNDDHIRRGGGSGAGNVNF
SQYYKKLGFKCDINPAQDFIETPPGILALDCMVYFARNYTQQYAKIVREN
SCRADEHECPFGRTSIELVKVLCDILRIGEPPAEQSGDFQPMFFTHDSPF
EEFFCICVITLNRTWKDMRATAEDFSTTFSVVREQIQRTLKGRPENLDDF
RNKIALLTYQQITTLRQQERTSKEECDSTASAIVKLKEKISPQILELIKQ
QRLSFLVEGTHFAKYLRGTRTKDKFWYARLSPNHKVIHYGDCDEKTIPTM
EELPKKLPISEIKQLLEGKECPHMKETRIRKSAVNLAFSITFENMEHSTL
DFVAPDESIFNYWTDGINALLGQPMVSKQKNEDFDTLLSMEIKLRLLDTE
GVDISKDPPPIPEDPENYDFCFESASFLDH
BO27516.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-26 14:33:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ced-12-PA | 724 | CG5336-PA | 1..724 | 1..724 | 3766 | 100 | Plus |
