BO27518.complete Sequence
1957 bp assembled on 2010-09-22
GenBank Submission: KX794908
> BO27518.complete
GAAGTTATCAGTCGACATGGAATTGAAAGGAGTTCAGCCATCGAATGGCA
GCTCAAATGGAAGTGGAAATGGAGCCACCAATGCTGCATCAACGGAAAAA
ACAGATGCCGAGAAGCCGACGGCGGAGCGCACCAATTGGGGCAATGGCCT
GGAGTTTCTAATGTCCTGCATATCGGTGTCCGTGGGATTGGGCAACGTCT
GGAGGTTCCCGTTCACGGCCTATGAGAATGGAGGAGGCGCCTTCCTTATA
CCCTACATCATAGTGCTCTTTCTGATCGGCAAACCCATGTACTATTTGGA
GATGATCATGGGCCAGTTCACGAGCCAGGGAACGGTGAAGATTTGGTCGG
TGGTGCCGGGATTTGTGGGCGTGGGCTATGGCCAGGCCTTCGGCACCATC
TGCATCATCTCGTACTATTCCTCGCTGTTGGCGCTGACCCTCTACTATCT
CTTTGTGTCCTTCCAATCGGAATTGCCGTGGTCCTACTGTCGCGATGAGT
GGACCAATTGCGTGAACTCGAGGCCGCAGGAGTATGTGGACAATCTGCTT
ACGGGCGTATCCTTGGCCAATGAATCGGCCAGAAATCTCAGCGGCATTGT
GGCCAACGATGAGACAGAGAAACTCCAGAGCAGCTCCGAACTCTATTTCC
TGAATGTAGTGATCAAGGAGAAGCTGGACATCTCGGACGGCGTTGGTGAT
CCCGATTGGAAGCTGACACTTGCCCTGTTCGTCGCCTGGGTGGTCATCTT
TCTGGTGATCATGCGAGGGGTGAAGAGTTCCGGCAAGGCGGCCTACTTCC
TGGCCCTGTTCCCCTACGTGGTGCTCTTCGTCCTGCTGATCCGTGCCGTT
ACCTTGGAGGGAGCACGCGATGGCATTCTGTTCTTTCTGGAGCCACAGTG
GGGTGAACTCTTGAACCCCACCGTTTGGAAGGAGGCCGTTGTGCAGTGCT
TCTTCTCGCTGGCCGTGGGCTCCGGACCCATTATCATGTTCGCCTCGTAC
AATCGATTCGATCACGGAATCTATAGGGATGCCATGATCGTAACCACACT
GGACACGCTGACCAGCCTCCTGGGAGGTATAACGATATTTGCGATCTTGG
GCAATCTGGCGCACAATCTGCAGATCGAAAACATCAGAGATGTGGTGCGA
AGTGGCACGGGATTGGCCTTCATCTCGTATCCGGATGCCATATCAAAGTT
CCAGGCGGTGCCGCAGCTTTTCTCGGTTCTGTTCTTCTTCATGCTGTTCG
TCCTGGGCATTGGATCAATTGTGGCCCTGCAGAGCACCATTGTCACCATC
ATTTGCGATCAGTTCAAGGGATGGAAGTACTGGAAGGTGGCACTGACCAC
CTCTGTGTGCGGTTTCCTTATGGGTTTGGTCTACGTTACACCGGGCGGAC
AGTGGATCCTCACTTTGGTGGACTTCTATGGCGGAACCTATGTGGTCTTC
ATCTTGGCCATTTTCGAACTGGCTGGCATCGTGTGGGTTTATGGTCTGCA
AAACTTTTGCGATGACATCGAGTTTATGTGCAATCGCCGAGTTTCACTGT
ACTGGCGAGTATGCTGGTCCTTCTTCACGCCCGTCATGATGATCATCATA
TTCATATACTCGATGGTCACCATCGAACCGATCAAATATAGCGAACTGTA
CTTCCCCGAAGCCGCCAACATTGCCGGCTGGCTGCTGTTCGCCATCGGTG
CTGCCCAGTTTCCACTGTGGGGTCTTTGGTACATCTCGCGCCATCCACAA
GGCACCTACTGGAAGTCTCTGAAGGCCTCGCTGAAGCCCAGCGATCGCTG
GGGTCCTGCCAATCCGGAAATTCGGCGCGAATGGGTGATCTTCAAGAATC
AGAAGGCAGCCCAAAGAGCCACGCAGAAGGATACGTCGAAACTTGGTTTC
TTCTGGCGCAAAGTGGCCAATTTCTGTGGCAGCAACAAGGCAAGCTTTCT
AGACCAT
BO27518.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 07:59:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| NAAT1-RA | 1926 | CG3252-PA | 1..1923 | 17..1939 | 9615 | 100 | Plus |
| CG15279-RD | 1902 | CG15279-PD | 144..338 | 124..318 | 345 | 78.5 | Plus |
| CG15279-RA | 1920 | CG15279-PA | 144..338 | 124..318 | 345 | 78.5 | Plus |
| CG15279-RD | 1902 | CG15279-PD | 1147..1253 | 1160..1266 | 220 | 80.4 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 07:59:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| NAAT1-RA | 2485 | CG3252-RA | 284..2206 | 17..1939 | 9615 | 100 | Plus |
| CG15279-RD | 2513 | CG15279-RD | 631..825 | 124..318 | 345 | 78.5 | Plus |
| CG15279-RA | 2110 | CG15279-RA | 210..404 | 124..318 | 345 | 78.5 | Plus |
| CG15279-RD | 2513 | CG15279-RD | 1634..1740 | 1160..1266 | 220 | 80.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 07:59:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 5406325..5407067 | 1394..652 | 3715 | 100 | Minus |
| X | 23542271 | X | 5407319..5407693 | 652..278 | 1875 | 100 | Minus |
| X | 23542271 | X | 5407746..5407927 | 279..98 | 910 | 100 | Minus |
| X | 23542271 | X | 5405905..5406082 | 1670..1493 | 890 | 100 | Minus |
| X | 23542271 | X | 5405517..5405692 | 1939..1764 | 880 | 100 | Minus |
| X | 23542271 | X | 5406147..5406249 | 1495..1393 | 515 | 100 | Minus |
| X | 23542271 | X | 5405757..5405851 | 1765..1671 | 475 | 100 | Minus |
| X | 23542271 | X | 5410486..5410566 | 97..17 | 405 | 100 | Minus |
| 2L | 23513712 | 2L | 14848724..14848918 | 318..124 | 345 | 78.5 | Minus |
| 2L | 23513712 | 2L | 14845880..14845986 | 1266..1160 | 220 | 80.4 | Minus |
| 2R | 25286936 | 2R | 9795678..9795850 | 152..324 | 220 | 75.1 | Plus |
| 2R | 25286936 | 2R | 9797149..9797245 | 1164..1260 | 215 | 81.4 | Plus |
| 3L | 28110227 | 3L | 9212965..9213151 | 133..319 | 215 | 74.3 | Plus |
Blast to na_te.dros performed on 2014-11-28 07:59:09 has no hits.
BO27518.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-09-22 19:18:48 Download gff for
BO27518.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3252-RA | 280..2202 | 17..1941 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:30:27 Download gff for
BO27518.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| NAAT1-RA | 284..2206 | 17..1941 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:08:27 Download gff for
BO27518.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| NAAT1-RA | 284..2206 | 17..1941 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:08:27 Download gff for
BO27518.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 5406149..5406248 | 1394..1493 | 100 | <- | Minus |
| X | 5405515..5405690 | 1766..1941 | 98 | <- | Minus |
| X | 5405757..5405851 | 1671..1765 | 100 | <- | Minus |
| X | 5405905..5406081 | 1494..1670 | 100 | <- | Minus |
| X | 5406326..5407067 | 652..1393 | 100 | <- | Minus |
| X | 5407320..5407692 | 279..651 | 100 | <- | Minus |
| X | 5407747..5407927 | 98..278 | 100 | <- | Minus |
| X | 5410486..5410566 | 17..97 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:30:27 Download gff for
BO27518.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 5304519..5304599 | 17..97 | 100 | | Minus |
| arm_X | 5299548..5299723 | 1766..1941 | 98 | <- | Minus |
| arm_X | 5299790..5299884 | 1671..1765 | 100 | <- | Minus |
| arm_X | 5299938..5300114 | 1494..1670 | 100 | <- | Minus |
| arm_X | 5300182..5300281 | 1394..1493 | 100 | <- | Minus |
| arm_X | 5300359..5301100 | 652..1393 | 100 | <- | Minus |
| arm_X | 5301353..5301725 | 279..651 | 100 | <- | Minus |
| arm_X | 5301780..5301960 | 98..278 | 100 | <- | Minus |
BO27518.pep Sequence
Translation from 16 to 1957
> BO27518.pep
MELKGVQPSNGSSNGSGNGATNAASTEKTDAEKPTAERTNWGNGLEFLMS
CISVSVGLGNVWRFPFTAYENGGGAFLIPYIIVLFLIGKPMYYLEMIMGQ
FTSQGTVKIWSVVPGFVGVGYGQAFGTICIISYYSSLLALTLYYLFVSFQ
SELPWSYCRDEWTNCVNSRPQEYVDNLLTGVSLANESARNLSGIVANDET
EKLQSSSELYFLNVVIKEKLDISDGVGDPDWKLTLALFVAWVVIFLVIMR
GVKSSGKAAYFLALFPYVVLFVLLIRAVTLEGARDGILFFLEPQWGELLN
PTVWKEAVVQCFFSLAVGSGPIIMFASYNRFDHGIYRDAMIVTTLDTLTS
LLGGITIFAILGNLAHNLQIENIRDVVRSGTGLAFISYPDAISKFQAVPQ
LFSVLFFFMLFVLGIGSIVALQSTIVTIICDQFKGWKYWKVALTTSVCGF
LMGLVYVTPGGQWILTLVDFYGGTYVVFILAIFELAGIVWVYGLQNFCDD
IEFMCNRRVSLYWRVCWSFFTPVMMIIIFIYSMVTIEPIKYSELYFPEAA
NIAGWLLFAIGAAQFPLWGLWYISRHPQGTYWKSLKASLKPSDRWGPANP
EIRREWVIFKNQKAAQRATQKDTSKLGFFWRKVANFCGSNKASFLDH
BO27518.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-26 14:33:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| NAAT1-PA | 641 | CG3252-PA | 1..641 | 1..641 | 3382 | 100 | Plus |
| CG1698-PB | 654 | CG1698-PB | 28..648 | 1..633 | 1646 | 49.2 | Plus |
| CG1698-PA | 654 | CG1698-PA | 28..648 | 1..633 | 1646 | 49.2 | Plus |
| CG15279-PA | 639 | CG15279-PA | 28..613 | 16..606 | 1626 | 50.3 | Plus |
| CG15279-PB | 639 | CG15279-PB | 28..613 | 16..606 | 1626 | 50.3 | Plus |
