BO27520.complete Sequence
2461 bp assembled on 2010-10-26
GenBank Submission: KX796940
> BO27520.complete
GAAGTTATCAGTCGACATGACTGTCTCGTATGCGGGTGAAGTGCCAAATG
GGAGCAGCTTTGGCTGTTTCTGGAAGATCCTGTGGAAATGGCGAGGCAGC
GTTTACAAATTGATTTGGCGCGAATTAGTTGCGTATCTGTGTTTATACTA
TACCATAAATGTTATCTACAGATTTGGTCTGACAGAAAGTCAGCAAGCCA
TTTTTAAAAAAATTCGCCTTTATTTTGGGCAGCAGAGTGAAAGTATACCC
ATGTCCTTTGTGCTGGGCTTCTATGTGAATCTGGTGGTGAAACGTTGGTG
GGAGCAATATAGGCTTTTGCCCTGGCCAGATACGTTGGCCCTGTTCATAA
GCGCGGCTATTCCCAACTCAAATGGCGGTGTAAATAATGAAACGGGTCGC
CTGATGCGTCGTAATATCATGCGCTATATGGTCTTGGCCTATGTGATTAC
CCTTCAGCGAATTTCCCTTCGTGTAAAACGTCGTTTTCCCACAACCCAAC
ATCTCGTGGATGCGGGTCTGATGCACGAATCGGAGATGAAAATCTTTGAG
GCACTGAATCAGAAGAGTCCCATGTCCAAATACTGGATGCCTCTCGTTTG
GGCTACCAACATCATAAACCGGGCCAGAAAGGATGGCCTAATCGCCTCGG
ATCATATTGTGCAAACCATACTGGTAGAGCTCTCGGATATTCGTAGACGT
TTAGGTGGTCTTATTGGATACGACACGGTCTGTGTTCCTTTGGTCTACAC
TCAGGTAGTCACCCTGGTGCTGTACACCTATTTCATAGCTGCCCTTTTGG
GCCGTCAAATGTTGCCCAACGTTCTGGACAGAAGTGGACGCGAAGATCCC
GATCTGTTCTTCCCCCTGTTTACCGTATTGCAGTTTGTTTTCTACGTGGG
CTGGCTGAAGGTGGCCGAGGTGCTAATCAATCCCTTTGGCGAAGATGACG
ATGATATCGAGCTGAACTGGCTAATTGACCGACACATCAAGGCTGCCTAC
ATGATCGTGGACGAGATGCACGAGGAGCACCCCGAGCTGCTGCGGGATCA
GTACTGGGAGTGTGTGGTGCCCAAGGATCTGCCCTATACGGTGGCATCCG
AACACTACCGGAAAGACGAGCCCAAGGGCTCCGCCGAGAAGTACAAGGTC
AAGAAGGAGGACGCCATGTACGCCAACATAATGCCAGGCGGCGGCAAGAG
GATGCTCAGCGACGATGTCTACGCGGACTATGAAAGCGTGGACACGCCAA
TGGTGGAAAGGAGGAAAAACAACTGGCTGGTTCGCCAGCTCTCCCGAATG
GGTTCCATGAGGAGCCAGTCGACGGCCTACTCCTCCGGCGGAATGCCATT
CAACCGGAACCGCCTCAACTCCGTCTACTCTAGTCCCGAGTCCGGCTTGC
CACTGACCATCCTGCAGCAGCAGCAATTACAGCAGGCGCATCAGCAGCAG
CAAGCCGGATCGCAGCCAAGTAAATCAAGTCTCTATGGAAAGTTTGTGCA
TCGTAAATCGTTGAGAGCACAACGCCAACTTATCAAGCAAAACTCCAAAT
TAAATGGCTTGAATGTCAATGTGGCCAAGACCAGACCGCGCATTCCCACA
CCCGAGGTGGCCAAGGATGGCAACACGAATCCAGCCACCAGCTCGGTCCT
AATGGCACCACAGCAGCTGAGCACCACCAGCGCACCACCGGGCATGTACC
CCTCCTCTTACGCACCCGACACACTACTGCACCAGGAGAGCGGTCAGGTG
CTGGGCACGCTGCTGCTCTCGCCCATCAAAGAGATGGATAGCTCATCGTC
CAATAACACTCTGATTCCAGGTCATCCGGCTACCGCAGCTTTGGCAGCCA
GCATGAAGGAGGGATTCACGCCGAGCAGTATTCCAGCTGCCACAAACATC
ACCACTCTGTCGTTCCCCTTCAGCGTGACCAGCACCGGTGGGGAAACGAT
GCCCACTGGGACACTGAGCATCCTGCCCATTTCGGCGAATGCCCAGCTGC
CCACGATAACGACGACGGCAAGTGGCTACGATCCTAACGATGTGATCACC
ACGATACCGGTGTCCTTGTCCATCCAGCGATCGCCGTCAGCACTTTCCAT
TGTGGAGCTGACCGGTGCAGATGTCCAGGATGGATATAGCAACAGTGGGT
CGAGCAATGGCAATGGCGGTATCACCACTACGGCACTGCTGTCCGTTAAG
CCCCTCAATGGAAACCAGAACATTTCGCGAAACAACAGTTTCAACCTGAG
CCTCAATCTGCAGGATCCGCAGCAACGATCCTCGATGAGGTCAGCGGGTC
CCACGGGCACAGTGGACAACTCAGGCACGATGCCAATTCCTCAGAGGAGC
GGAGGCCTGGAAACGGGCGAAGTCGGAGGATCCTCGGCCCCCTCAACTCT
GGCCAAACACAAGCCGGAACAAAAGACCGGAGAGGTGTACGTCGCAAGCT
TTCTAGACCAT
BO27520.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:31:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Best2-RA | 2430 | CG10173-PA | 1..2427 | 17..2443 | 12135 | 100 | Plus |
| Best1-RD | 2211 | CG6264-PD | 857..1064 | 879..1086 | 275 | 75.5 | Plus |
| Best1-RC | 2355 | CG6264-PC | 857..1064 | 879..1086 | 275 | 75.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:31:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Best2-RA | 3547 | CG10173-RA | 413..2839 | 17..2443 | 12135 | 100 | Plus |
| Best1-RD | 2930 | CG6264-RD | 1295..1502 | 879..1086 | 275 | 75.5 | Plus |
| Best1-RC | 3074 | CG6264-RC | 1295..1502 | 879..1086 | 275 | 75.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:31:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 6246641..6247206 | 2443..1878 | 2830 | 100 | Minus |
| 3L | 28110227 | 3L | 6251578..6251948 | 756..386 | 1855 | 100 | Minus |
| 3L | 28110227 | 3L | 6247907..6248216 | 1541..1232 | 1550 | 100 | Minus |
| 3L | 28110227 | 3L | 6247355..6247602 | 1880..1633 | 1240 | 100 | Minus |
| 3L | 28110227 | 3L | 6248545..6248787 | 1232..990 | 1215 | 100 | Minus |
| 3L | 28110227 | 3L | 6252008..6252194 | 385..199 | 935 | 100 | Minus |
| 3L | 28110227 | 3L | 6251371..6251503 | 883..751 | 665 | 100 | Minus |
| 3L | 28110227 | 3L | 6250609..6250723 | 992..878 | 575 | 100 | Minus |
| 3L | 28110227 | 3L | 6252259..6252369 | 198..88 | 555 | 100 | Minus |
| 3L | 28110227 | 3L | 6247671..6247763 | 1634..1542 | 465 | 100 | Minus |
| 3L | 28110227 | 3L | 6253500..6253570 | 87..17 | 355 | 100 | Minus |
| 3R | 32079331 | 3R | 10165025..10165101 | 955..879 | 190 | 83.1 | Minus |
Blast to na_te.dros performed on 2014-11-26 15:31:10 has no hits.
BO27520.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-10-26 17:34:12 Download gff for
BO27520.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Best2-RA | 414..2840 | 17..2445 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:32:29 Download gff for
BO27520.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Best2-RA | 413..2839 | 17..2445 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:14:49 Download gff for
BO27520.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Best2-RA | 413..2839 | 17..2445 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:14:49 Download gff for
BO27520.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 6251580..6251948 | 386..754 | 100 | <- | Minus |
| 3L | 6252008..6252194 | 199..385 | 100 | <- | Minus |
| 3L | 6246637..6247206 | 1878..2445 | 99 | <- | Minus |
| 3L | 6247358..6247600 | 1635..1877 | 100 | <- | Minus |
| 3L | 6247671..6247763 | 1542..1634 | 100 | <- | Minus |
| 3L | 6247907..6248216 | 1232..1541 | 100 | <- | Minus |
| 3L | 6248546..6248785 | 992..1231 | 100 | <- | Minus |
| 3L | 6250610..6250717 | 884..991 | 100 | <- | Minus |
| 3L | 6251371..6251499 | 755..883 | 100 | <- | Minus |
| 3L | 6252259..6252369 | 88..198 | 100 | <- | Minus |
| 3L | 6253500..6253570 | 17..87 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:32:29 Download gff for
BO27520.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 6239737..6240306 | 1878..2445 | 99 | <- | Minus |
| arm_3L | 6240458..6240700 | 1635..1877 | 100 | <- | Minus |
| arm_3L | 6240771..6240863 | 1542..1634 | 100 | <- | Minus |
| arm_3L | 6241007..6241316 | 1232..1541 | 100 | <- | Minus |
| arm_3L | 6241646..6241885 | 992..1231 | 100 | <- | Minus |
| arm_3L | 6243710..6243817 | 884..991 | 100 | <- | Minus |
| arm_3L | 6244471..6244599 | 755..883 | 100 | <- | Minus |
| arm_3L | 6244680..6245048 | 386..754 | 100 | <- | Minus |
| arm_3L | 6245108..6245294 | 199..385 | 100 | <- | Minus |
| arm_3L | 6245359..6245469 | 88..198 | 100 | <- | Minus |
| arm_3L | 6246600..6246670 | 17..87 | 100 | | Minus |
BO27520.pep Sequence
Translation from 16 to 2461
> BO27520.pep
MTVSYAGEVPNGSSFGCFWKILWKWRGSVYKLIWRELVAYLCLYYTINVI
YRFGLTESQQAIFKKIRLYFGQQSESIPMSFVLGFYVNLVVKRWWEQYRL
LPWPDTLALFISAAIPNSNGGVNNETGRLMRRNIMRYMVLAYVITLQRIS
LRVKRRFPTTQHLVDAGLMHESEMKIFEALNQKSPMSKYWMPLVWATNII
NRARKDGLIASDHIVQTILVELSDIRRRLGGLIGYDTVCVPLVYTQVVTL
VLYTYFIAALLGRQMLPNVLDRSGREDPDLFFPLFTVLQFVFYVGWLKVA
EVLINPFGEDDDDIELNWLIDRHIKAAYMIVDEMHEEHPELLRDQYWECV
VPKDLPYTVASEHYRKDEPKGSAEKYKVKKEDAMYANIMPGGGKRMLSDD
VYADYESVDTPMVERRKNNWLVRQLSRMGSMRSQSTAYSSGGMPFNRNRL
NSVYSSPESGLPLTILQQQQLQQAHQQQQAGSQPSKSSLYGKFVHRKSLR
AQRQLIKQNSKLNGLNVNVAKTRPRIPTPEVAKDGNTNPATSSVLMAPQQ
LSTTSAPPGMYPSSYAPDTLLHQESGQVLGTLLLSPIKEMDSSSSNNTLI
PGHPATAALAASMKEGFTPSSIPAATNITTLSFPFSVTSTGGETMPTGTL
SILPISANAQLPTITTTASGYDPNDVITTIPVSLSIQRSPSALSIVELTG
ADVQDGYSNSGSSNGNGGITTTALLSVKPLNGNQNISRNNSFNLSLNLQD
PQQRSSMRSAGPTGTVDNSGTMPIPQRSGGLETGEVGGSSAPSTLAKHKP
EQKTGEVYVASFLDH
BO27520.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 12:44:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Best2-PA | 809 | CG10173-PA | 1..809 | 1..809 | 4189 | 100 | Plus |
| Best1-PA | 721 | CG6264-PA | 1..382 | 1..384 | 1098 | 52.2 | Plus |
| Best1-PD | 736 | CG6264-PD | 1..382 | 1..384 | 1098 | 52.2 | Plus |
| Best1-PB | 769 | CG6264-PB | 1..382 | 1..384 | 1098 | 52.2 | Plus |
| Best1-PC | 784 | CG6264-PC | 1..382 | 1..384 | 1098 | 52.2 | Plus |
