BO27521.complete Sequence
2656 bp assembled on 2010-09-13
GenBank Submission: KX793950
> BO27521.complete
GAAGTTATCAGTCGACATGGGAGCCACTAGGAATGGCAAGTCCCTTTCGG
GGTCTGAGAACCTAATAATCGAGGTGGATGAGGACAAGATCCGTTGCAAG
CAGTATTCCTGGTACTTTGCCCCCATCTACCTCCTGTTCTGGGTGGGTCT
CTTCTTCGCCGTCATATATCCACTTTTCCAGGCCTTGCCCACCGGAATCA
AAATCTCCGAGGAGGCGGATAAACCGGGACAATTCGTGGCCGAGAGAGCT
CAGGAAATACTGCTGCAAATAAGTCGATTGGGACCCCGTGTGGTGGGTGA
TGTTGATAATGAAGTCACAGTTGTGAATTTGCTGCTCGCTGAAATCGAAA
AAGTGCGCCAGGTGCTGCGAGACGATGTCTATGAAATGGAGGTGGAGGTG
CAACGGGCATCCGGATCCTACTTGATCAAAGGCCTAACGAATCACTATCA
GGGTGTGCAGAATGTGATCGTTAGACTGAGTACGAAGAGCTCAAATAGCA
CCTCCTACCTTTTGGTCAATAGTCACTACGATACCAAGCCGGGTTCACCT
GGTGCCGGAGATGATGCTGCCATGGTTGTCGTAATGCTGGAGGTACTGCG
TCTGGTCGCCGTTTCAGGGGATCCCTTCCTGCATCCGATTATATTCCTTT
TCAATGGTGCCGAAGAGCAGCCAATGCAGGGATCACATGGTTTCATCACG
CAGCACAGATGGGCTGCCAACTGCAAGGCTCTACTGAACTTGGATTCCGC
TGGCGCTGGTGGACGTGATTTGCTCTTCCAGGGCGGTCCCAATCATCCCT
GGCTGATGGAGCATTACAGAAACAGTGCCCCGCACCCGTTCGCCACCACA
ACGGCCGAGGAGATGTTCGAGGCTGGTATCATACCATCGGATACTGATTT
CCGGATCTTTCGGGACTTTGGAGTTGTGCCAGGCTTGGACATGGCCGGCG
TGTACAATGGATTCGTTTATCACACGAAATTCGATCGCTACGCGGTGATA
AGTCTCGATTCCCTGCAGAATTCCGGCGACAATTTACTGGCCTTGGTATG
GAGTATTTCGAATGCCGAAGAAATGTACGACACAGAGGCACACGCGGCGG
GACATGCAGTATTCTTCGACTTTATTGGACTGTTCTTTGTCCATTACCAG
GAGTCGACTAGCTTGGCCCTGAATCTCTTCTTCTCGTTCGGTGCCATTTT
GCTGGTCTGCATCTCGTTGTGGCGAATGTCCCGGGTTACTGGACAGACTA
TGGGCACCTATGCCGGCGTCTTTGGACTCCTATTCCTGCTAGCCCTAGCT
GGTGCTCTCCTCGCCGTGGCCTTTCCTCTGCTGATGGCCACCTTTTATGA
TTGGGGAAATAGAACGTTGACCTATTTTAGCAACAGTTGGCTGGTCATTG
GGTTGTACATTTGTCCATCGGTTATTGGCCTTGTACTGCCCATGACCCTC
TACTTGACGCATACGAAGTGTAACAAGATCCCCCATACTTATTACTTGCA
TATTGTGGGTCACGCGAACTGTGTCCTTTTGGCCATCTTGTGTTTGGGTG
CAACGGCTCTTAAATACCGTAGTGCCTATCTATTTCTGATCTCTCTCATT
TTCTACGTTGCTGCTCTGATCATTAACCTACTGACCCGTCTCCATTGTCG
CGGTTATCTGTGGTCACTGGTGCTGATTGTTTTCCAGATTATACCCTTCA
TTTACCACGCCTACTTGTTCCACATGTTCATACTTATTCTCATTCCGATG
ACTGGTCGCTTTGGCGTCTCCACCAATCCGGATATACTAATCGGCGCTCT
ATGTGGTTTTGGCACAATTTTGGCGTTATCTTTTGCTGCTCCTTTAATCA
ATGTCTTTCGGCGACCGAACTGCATGCTGGGTGGTCTGGCACTGGTTATG
TTTATTTTCTGCATGATTGCCGTCTCGGATGTCGGATTCCCGTATCGGCC
CAAAACAAATGTCATGCGTGCCGACTTCATGCAAGTGCATCGCAAATTTT
TCGAGTACAATGGTTCCATCAGCCACGAGGATTCTGGCTACTACTTCCAT
CTGGGGGATCGAAACAAAGAGGCACCTCTGCGCGATCACATGAACCTGAC
CAACCTGGTACGCCTGGGCGAGGATTGCGACTCCGAGCTGATGTGCGGTA
TTCCCTGCTACCGATATTGTAGTGCCCGGGAGCATGCACTTTGGCTTGCT
CGAGAGGAGCCCGTGGAACTGCCTTATCCAACGGTCTTGGAGTTCCTTAG
CAAGACAGTTCTGTCCGGTGGCTATCAGGTGCGCTATGAGTTCCGGCTAA
CTGGTCCGCCAAATATGGGTCTGTTCTTCAAGCCACTGGATGGTGTAAAA
CTACTCCGATGGACGTTTGCTCCCGCAATGCTGGATAATCCGGCCACTTA
CAGGCCTCCTCTGGAGGTCATGTTAACCTACGGTATTGATAACACTCCCA
TCGAATTCTTCGTGGAACTTTCTAAGGACGATGGCAACTTCAATGAACCC
GTCTTTGAGATGGGCGTCTCTGGACACTATGTCAGTCCACATGATAAGCG
GGATGCGTTGAGCCTGGAGTTCCTTGCCACACTTCCGGACTTTGCCTTCT
CGATGGAGTGGCCCAGTAGCTACGAACGGCATATATTCGCAAGCTTTCTA
GACCAT
BO27521.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 05:20:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13160-RA | 2625 | CG13160-PA | 1..2622 | 17..2638 | 13110 | 100 | Plus |
| CG13160-RB | 2628 | CG13160-PB | 1..2625 | 17..2638 | 13045 | 99.9 | Plus |
| CG33012-RC | 2739 | CG33012-PC | 547..1539 | 464..1456 | 645 | 71 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:20:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13160-RA | 2733 | CG13160-RA | 69..2690 | 17..2638 | 13110 | 100 | Plus |
| CG13160-RB | 2736 | CG13160-RB | 69..2693 | 17..2638 | 13045 | 99.9 | Plus |
| CG33012-RC | 2849 | CG33012-RC | 604..1596 | 464..1456 | 645 | 71 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 05:20:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 12371764..12372279 | 39..554 | 2580 | 100 | Plus |
| 2R | 25286936 | 2R | 12374329..12374821 | 1981..2473 | 2465 | 100 | Plus |
| 2R | 25286936 | 2R | 12373205..12373590 | 1086..1471 | 1930 | 100 | Plus |
| 2R | 25286936 | 2R | 12373884..12374070 | 1652..1838 | 935 | 100 | Plus |
| 2R | 25286936 | 2R | 12373648..12373830 | 1472..1654 | 915 | 100 | Plus |
| 2R | 25286936 | 2R | 12372332..12372508 | 551..727 | 885 | 100 | Plus |
| 2R | 25286936 | 2R | 12374874..12375038 | 2474..2638 | 825 | 100 | Plus |
| 2R | 25286936 | 2R | 12372993..12373151 | 930..1088 | 795 | 100 | Plus |
| 2R | 25286936 | 2R | 12374123..12374266 | 1838..1981 | 720 | 100 | Plus |
| 2R | 25286936 | 2R | 12372808..12372931 | 810..933 | 620 | 100 | Plus |
| 2R | 25286936 | 2R | 12372564..12372648 | 727..811 | 425 | 100 | Plus |
| 2R | 25286936 | 2R | 12369889..12370008 | 1850..1969 | 225 | 79.2 | Plus |
| 2R | 25286936 | 2R | 12368340..12368411 | 737..808 | 195 | 84.7 | Plus |
Blast to na_te.dros performed on 2014-11-28 05:20:13 has no hits.
BO27521.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-09-16 10:43:53 Download gff for
BO27521.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13160-RA | 67..2688 | 17..2640 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:26:04 Download gff for
BO27521.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13160-RA | 69..2690 | 17..2640 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 06:08:49 Download gff for
BO27521.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13160-RA | 69..2690 | 17..2640 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 06:08:49 Download gff for
BO27521.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 12371662..12371685 | 17..40 | 100 | -> | Plus |
| 2R | 12371766..12372276 | 41..551 | 100 | -> | Plus |
| 2R | 12372333..12372507 | 552..726 | 100 | -> | Plus |
| 2R | 12372564..12372648 | 727..811 | 100 | -> | Plus |
| 2R | 12372810..12372930 | 812..932 | 100 | -> | Plus |
| 2R | 12372996..12373150 | 933..1087 | 100 | -> | Plus |
| 2R | 12373207..12373590 | 1088..1471 | 100 | -> | Plus |
| 2R | 12373648..12373828 | 1472..1652 | 100 | -> | Plus |
| 2R | 12373885..12374069 | 1653..1837 | 100 | -> | Plus |
| 2R | 12374123..12374266 | 1838..1981 | 100 | -> | Plus |
| 2R | 12374330..12374821 | 1982..2473 | 100 | -> | Plus |
| 2R | 12374874..12375038 | 2474..2640 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:26:04 Download gff for
BO27521.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 8261628..8261771 | 1838..1981 | 100 | -> | Plus |
| arm_2R | 8259167..8259190 | 17..40 | 100 | -> | Plus |
| arm_2R | 8259271..8259781 | 41..551 | 100 | -> | Plus |
| arm_2R | 8259838..8260012 | 552..726 | 100 | -> | Plus |
| arm_2R | 8260069..8260153 | 727..811 | 100 | -> | Plus |
| arm_2R | 8260315..8260435 | 812..932 | 100 | -> | Plus |
| arm_2R | 8260501..8260655 | 933..1087 | 100 | -> | Plus |
| arm_2R | 8260712..8261095 | 1088..1471 | 100 | -> | Plus |
| arm_2R | 8261153..8261333 | 1472..1652 | 100 | -> | Plus |
| arm_2R | 8261390..8261574 | 1653..1837 | 100 | -> | Plus |
| arm_2R | 8261835..8262326 | 1982..2473 | 100 | -> | Plus |
| arm_2R | 8262379..8262543 | 2474..2640 | 98 | | Plus |
BO27521.pep Sequence
Translation from 16 to 2656
> BO27521.pep
MGATRNGKSLSGSENLIIEVDEDKIRCKQYSWYFAPIYLLFWVGLFFAVI
YPLFQALPTGIKISEEADKPGQFVAERAQEILLQISRLGPRVVGDVDNEV
TVVNLLLAEIEKVRQVLRDDVYEMEVEVQRASGSYLIKGLTNHYQGVQNV
IVRLSTKSSNSTSYLLVNSHYDTKPGSPGAGDDAAMVVVMLEVLRLVAVS
GDPFLHPIIFLFNGAEEQPMQGSHGFITQHRWAANCKALLNLDSAGAGGR
DLLFQGGPNHPWLMEHYRNSAPHPFATTTAEEMFEAGIIPSDTDFRIFRD
FGVVPGLDMAGVYNGFVYHTKFDRYAVISLDSLQNSGDNLLALVWSISNA
EEMYDTEAHAAGHAVFFDFIGLFFVHYQESTSLALNLFFSFGAILLVCIS
LWRMSRVTGQTMGTYAGVFGLLFLLALAGALLAVAFPLLMATFYDWGNRT
LTYFSNSWLVIGLYICPSVIGLVLPMTLYLTHTKCNKIPHTYYLHIVGHA
NCVLLAILCLGATALKYRSAYLFLISLIFYVAALIINLLTRLHCRGYLWS
LVLIVFQIIPFIYHAYLFHMFILILIPMTGRFGVSTNPDILIGALCGFGT
ILALSFAAPLINVFRRPNCMLGGLALVMFIFCMIAVSDVGFPYRPKTNVM
RADFMQVHRKFFEYNGSISHEDSGYYFHLGDRNKEAPLRDHMNLTNLVRL
GEDCDSELMCGIPCYRYCSAREHALWLAREEPVELPYPTVLEFLSKTVLS
GGYQVRYEFRLTGPPNMGLFFKPLDGVKLLRWTFAPAMLDNPATYRPPLE
VMLTYGIDNTPIEFFVELSKDDGNFNEPVFEMGVSGHYVSPHDKRDALSL
EFLATLPDFAFSMEWPSSYERHIFASFLDH
BO27521.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-26 14:29:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13160-PA | 874 | CG13160-PA | 1..874 | 1..874 | 4611 | 100 | Plus |
| CG13160-PB | 875 | CG13160-PB | 1..875 | 1..874 | 4599 | 99.9 | Plus |
| CG33012-PC | 912 | CG33012-PC | 50..912 | 17..874 | 2969 | 63 | Plus |
| CG30047-PA | 879 | CG30047-PA | 6..879 | 5..874 | 2526 | 52.6 | Plus |
| CG30049-PA | 878 | CG30049-PA | 24..878 | 22..874 | 2463 | 52.5 | Plus |
