BO27529.complete Sequence
1114 bp assembled on 2010-08-18
GenBank Submission: KX795010
> BO27529.complete
GAAGTTATCAGTCGACATGCGTGTCTCCTCGCTGTTCGTTGTGTGCGTGG
CCTCCCTGGTGGCCACCACTTTGGGTCGTCCTGAGCCCCCATCCCCGTAC
TCCTACCACGGATTGCCTCAGCAGCAGAGCCAGCGGGCTTTGCCACTCAA
TGCTCACCCCGTTCCCCCGCAGATTTACCAGCCTCTGCCCCAGGAGCAGT
CGTTTGCCAACTTTGCACCGCCCCAGCAGACCTACTTGCCACCCCAAATG
CATCTGGATGCCATCGAGCAAGTGGCTCCCACTGCCGCCGCCGCTGAGCC
CCTGAATGCCTACGATGACAGCTACAACATGGCCCACCGCCTGTCCGGAG
TGCAGCATGCCAGTGGCTACAACAATGGCCCCCAGGAGACCAAGGTGCAC
AAGCACATCTACGTCCATGTGCCGCCAAAGGACTTCGAGGAGGAGGATGC
CATCCAGACCCGAGTTCACCACCAGCAGGGACCCAAGCAGAAGCACTACA
AGATCGTGTTCATCAAGGCACCATCTGCTCCGGCTATCCGTCAGCCAGTT
GTGCCACCACCACCCCAGAATGAGGAGAAGACTCTGATCTATGTGCTGCA
CAAGAAGCCCGAGCAGGAGCAAGATATCGTGATCCCGACGCCACCACCCA
CCAAGCCATCGAAGCCAGAGGTTTACTTCATCAAGTACAAGACCAAGAAG
GACGAGGCCCCCGTCTATGGACCCCCACCTGCAGAGATGGAGCCCCGTCA
GGCCACCGCCGAGGATTTCGCTCCATTGGCTGAGGTCGCCGATGTCCTGC
CACCCACCACCCTGGCTCCTGCTCCCGAGCCGGAAGTAGAGCAGCCAGCC
ATTCCCTCCGCGGTCTACGGACCACCCACTGCAGCTGCCTATACTGGTGA
GGAGGTTCAGACCACCTTGTCCGCTCCTGCCAACCAGTATCTGCCCCCTG
CCACCGCTCCCGCCGCCCTGGCCATTGAGGAGCCCTCAATGGCGCCCATC
GTGGTGGAGGAACAGCCCGAGCAGCGACTGGCTCCTTCCCATGTGCCTGC
CACCAGCTACGGTCCTCCCAACCGCTACTTCCTTAAGAAGCTGAAGGCAA
GCTTTCTAGACCAT
BO27529.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:46:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| TwdlC-RA | 1083 | CG14254-PA | 1..1080 | 17..1096 | 5400 | 100 | Plus |
| TwdlT-RA | 861 | CG5812-PA | 553..689 | 566..702 | 370 | 84.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:46:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| TwdlC-RA | 1396 | CG14254-RA | 103..1182 | 17..1096 | 5400 | 100 | Plus |
| TwdlT-RA | 1607 | CG5812-RA | 743..879 | 566..702 | 370 | 84.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:46:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 26995284..26996228 | 152..1096 | 4725 | 100 | Plus |
| 3R | 32079331 | 3R | 26994934..26995069 | 17..152 | 680 | 100 | Plus |
| 3R | 32079331 | 3R | 27050140..27050276 | 566..702 | 370 | 84.7 | Plus |
Blast to na_te.dros performed 2014-11-28 02:46:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| R1A1-element | 5356 | R1A1-element DMRER1DM 5356bp Derived from X51968 (g8429) (Rel. 23, Last updated, Version 1). | 616..769 | 872..1031 | 120 | 56.8 | Plus |
BO27529.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-18 15:57:07 Download gff for
BO27529.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| TwdlC-RA | 99..1178 | 17..1098 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:21:27 Download gff for
BO27529.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| TwdlC-RA | 103..1182 | 17..1098 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:18:00 Download gff for
BO27529.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| TwdlC-RA | 103..1182 | 17..1098 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:18:00 Download gff for
BO27529.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 26994934..26995069 | 17..152 | 100 | -> | Plus |
| 3R | 26995285..26996228 | 153..1098 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:21:27 Download gff for
BO27529.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 22820656..22820791 | 17..152 | 100 | -> | Plus |
| arm_3R | 22821007..22821950 | 153..1098 | 99 | | Plus |
BO27529.pep Sequence
Translation from 16 to 1114
> BO27529.pep
MRVSSLFVVCVASLVATTLGRPEPPSPYSYHGLPQQQSQRALPLNAHPVP
PQIYQPLPQEQSFANFAPPQQTYLPPQMHLDAIEQVAPTAAAAEPLNAYD
DSYNMAHRLSGVQHASGYNNGPQETKVHKHIYVHVPPKDFEEEDAIQTRV
HHQQGPKQKHYKIVFIKAPSAPAIRQPVVPPPPQNEEKTLIYVLHKKPEQ
EQDIVIPTPPPTKPSKPEVYFIKYKTKKDEAPVYGPPPAEMEPRQATAED
FAPLAEVADVLPPTTLAPAPEPEVEQPAIPSAVYGPPTAAAYTGEEVQTT
LSAPANQYLPPATAPAALAIEEPSMAPIVVEEQPEQRLAPSHVPATSYGP
PNRYFLKKLKASFLDH
BO27529.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:18:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| TwdlC-PA | 360 | CG14254-PA | 1..360 | 1..360 | 1914 | 100 | Plus |
| TwdlT-PA | 286 | CG5812-PA | 121..236 | 117..235 | 378 | 62.2 | Plus |
| TwdlE-PA | 197 | CG14534-PA | 24..196 | 95..288 | 367 | 44.2 | Plus |
| TwdlBeta-PA | 198 | CG8986-PA | 23..180 | 68..239 | 336 | 44.9 | Plus |
| TwdlG-PC | 278 | CG14643-PC | 15..250 | 32..261 | 232 | 34.8 | Plus |
