BO27530.complete Sequence
730 bp assembled on 2010-08-18
GenBank Submission: KX794323
> BO27530.complete
GAAGTTATCAGTCGACATGTTTCCTAGTCGCCAAAACCAAACTTCCTTGA
AGAACTTCGGTGACAAGACCGCCAACCTCTTCAGCAAGAAGAAGGATGAG
GCCGAGAAGCTGGCCAACGAGAAGGCTGCCGAGGCCCAGAAGCTAGCCGA
GGAGCAGGCCAAGAAGGTGGGCCAGTCCGTACAGCAGACCAAGGGCGAGG
CCGAGCAGTTGGCCGCCAGCACGGCCAAGGAAGCCGCTGCTCTAGCCACC
GCGGAGGCTCAGAAGGCTGGACAGGCGATTGACCAGGGTGTGAACCGTGC
CGCCGGAGCCGTCAACCAAGGCAAGCAGGCGGTGGACAACACGGTGGCCC
AGGCGGCGGCCGTGGCCCAGAACTCCAAGCAGGTGGCGGCCAATGTGGCG
GAGGCCTCCCAGCGAGCGGCCGCCAATGCGGTGGACCAGACCAAGAAGGC
GGCCAACGACGCCATCAACAAGAGCGTGAAGGCCGCCGAGAACGTGGCGG
ACCAGAAGCTGAAGCAGGCGGAGGGCGCCATCGATGGGGCACTGAAGCAG
ACCAGTCAAACGGTGGACCAGAAGCTGCAGGAGGCCAACCAGTATGTCGA
CCAGAAGCGCCAGTCCGTCGAGAAGACCGTCCAGGATGCGGCAGGACAGG
CCCAGGAGTCTGCCGGACAGCAGGCCAACGCCCTGTTGGGCAAGCTGCAT
CTGGGTCAGAAGGCAAGCTTTCTAGACCAT
BO27530.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:46:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1648-RB | 699 | CG1648-PB | 1..696 | 17..712 | 3450 | 99.7 | Plus |
| CG1648-RC | 693 | CG1648-PC | 20..690 | 42..712 | 3325 | 99.7 | Plus |
| CG1648-RA | 693 | CG1648-PA | 20..690 | 42..712 | 3325 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:46:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1648-RB | 884 | CG1648-RB | 19..722 | 9..712 | 3460 | 99.4 | Plus |
| CG1648-RC | 1392 | CG1648-RC | 215..885 | 42..712 | 3325 | 99.7 | Plus |
| CG1648-RA | 1047 | CG1648-RA | 215..885 | 42..712 | 3325 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:46:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 9811481..9811969 | 712..224 | 2415 | 99.6 | Minus |
| 2R | 25286936 | 2R | 9812482..9812664 | 224..42 | 915 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 02:46:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dbuz\Osvaldo | 9045 | Dbuz\Osvaldo DBU133521 9045bp Derived from AJ133521 (Rel. 60, Last updated, Version 2). | 2933..2997 | 485..549 | 109 | 63.1 | Plus |
BO27530.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-18 15:57:03 Download gff for
BO27530.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1648-RB | 33..722 | 23..714 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:21:26 Download gff for
BO27530.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1648-RB | 33..722 | 23..714 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:17:59 Download gff for
BO27530.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1648-RB | 33..722 | 23..714 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:17:59 Download gff for
BO27530.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 9812482..9812664 | 42..224 | 100 | <- | Minus |
| 2R | 9812724..9812742 | 23..41 | 100 | | Minus |
| 2R | 9811479..9811968 | 225..714 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:21:26 Download gff for
BO27530.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 5698984..5699473 | 225..714 | 99 | <- | Minus |
| arm_2R | 5699987..5700169 | 42..224 | 100 | <- | Minus |
| arm_2R | 5700229..5700247 | 23..41 | 100 | | Minus |
BO27530.pep Sequence
Translation from 16 to 730
> BO27530.pep
MFPSRQNQTSLKNFGDKTANLFSKKKDEAEKLANEKAAEAQKLAEEQAKK
VGQSVQQTKGEAEQLAASTAKEAAALATAEAQKAGQAIDQGVNRAAGAVN
QGKQAVDNTVAQAAAVAQNSKQVAANVAEASQRAAANAVDQTKKAANDAI
NKSVKAAENVADQKLKQAEGAIDGALKQTSQTVDQKLQEANQYVDQKRQS
VEKTVQDAAGQAQESAGQQANALLGKLHLGQKASFLDH
BO27530.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:18:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1648-PB | 232 | CG1648-PB | 1..232 | 1..232 | 1113 | 100 | Plus |
| CG1648-PC | 230 | CG1648-PC | 8..230 | 10..232 | 1065 | 100 | Plus |
| CG1648-PA | 230 | CG1648-PA | 8..230 | 10..232 | 1065 | 100 | Plus |
| CG45076-PH | 619 | CG45076-PH | 311..545 | 5..220 | 158 | 25.1 | Plus |
| CG45076-PA | 619 | CG45076-PA | 311..545 | 5..220 | 158 | 25.1 | Plus |
