Clone BO27535 Report

Search the DGRC for BO27535

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:275
Well:35
Vector:pDNR-Dual
Associated Gene/Transcriptglec-RA
Protein status:BO27535.pep: Imported from assembly
Sequenced Size:718

Clone Sequence Records

BO27535.complete Sequence

718 bp assembled on 2010-08-18

GenBank Submission: KX799677

> BO27535.complete
GAAGTTATCAGTCGACATGTTGTGTCCGCCAATGGCCCTGGGCCCATTTC
TCGCCGCCCCCGTGCCACGCCCACCGCCCAGCGCATCGGAGAAGAAGAGA
ATCTGTCGGAACCTATTCAATAACGCTCCCGGGGACTCGAATATCGATCA
GCTGTTGGCCCAGGAGCAGCACACGCAGAGATTATACGTTAAGGAACGCT
ACGGATATGACATCCAGCTGGAATCTAATCGGGATGCGGATGCGAATACG
GATGCGGATGCTGATACGGATGCCCATTGTCAGGTCCTGCGCGGAATGCG
GTATCCGACCTCAAGGACGATATCCAGCACCGATGCCGATGAGTGCAATC
CAAAGGCAGTCAGCCAAGCGCCGAGGGGCATGGCCCTGACTCCCGCCCAG
ATCTCCGCCAGCGCAAAGCTGATCCTTCAGAAATGCCCGGAAAGCGATCG
CAAAAAAAGCAACGGCAGTGCGGATTTGGCCAACTGCACGCGACATGGCC
AAAAGCCATATGCGAGGCAGCCACAAGGCCTCAAAGGCATGTACAATGTT
CGCAAGACCGTGAATGGTATTTCGAAACCCAACGTCAAGAATGGTTACAA
CAACAACAACAACAGCAGCAGCAGCAACAACAACAGCAACATGAATATTA
ATAATAAGATTGTGGATAATGGTACTAGCGAATTGGCAGATCAGAAGCAG
GCAAGCTTTCTAGACCAT

BO27535.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:47:22
Subject Length Description Subject Range Query Range Score Percent Strand
glec-RA 687 CG6575-PA 1..684 17..700 3420 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:47:24
Subject Length Description Subject Range Query Range Score Percent Strand
glec-RA 2050 CG6575-RA 347..1031 16..700 3425 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:47:20
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 21855399..21855920 537..16 2610 100 Minus
3R 32079331 3R 21851713..21851878 700..535 830 100 Minus
Blast to na_te.dros performed on 2014-11-27 13:47:21 has no hits.

BO27535.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-18 15:57:09 Download gff for BO27535.complete
Subject Subject Range Query Range Percent Splice Strand
glec-RA 349..1027 22..702 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:33:04 Download gff for BO27535.complete
Subject Subject Range Query Range Percent Splice Strand
glec-RA 353..1031 22..702 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:26:30 Download gff for BO27535.complete
Subject Subject Range Query Range Percent Splice Strand
glec-RA 353..1031 22..702 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:26:30 Download gff for BO27535.complete
Subject Subject Range Query Range Percent Splice Strand
3R 21851711..21851876 537..702 98 <- Minus
3R 21855400..21855914 22..536 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:33:04 Download gff for BO27535.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 17677433..17677598 537..702 98 <- Minus
arm_3R 17681122..17681636 22..536 100   Minus

BO27535.pep Sequence

Translation from 16 to 718

> BO27535.pep
MLCPPMALGPFLAAPVPRPPPSASEKKRICRNLFNNAPGDSNIDQLLAQE
QHTQRLYVKERYGYDIQLESNRDADANTDADADTDAHCQVLRGMRYPTSR
TISSTDADECNPKAVSQAPRGMALTPAQISASAKLILQKCPESDRKKSNG
SADLANCTRHGQKPYARQPQGLKGMYNVRKTVNGISKPNVKNGYNNNNNS
SSSNNNSNMNINNKIVDNGTSELADQKQASFLDH

BO27535.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:18:53
Subject Length Description Subject Range Query Range Score Percent Strand
glec-PA 228 CG6575-PA 1..228 1..228 1202 100 Plus