BO27538.complete Sequence
361 bp assembled on 2010-08-18
GenBank Submission: KX798250
> BO27538.complete
GAAGTTATCAGTCGACATGGTTTTGCTAGACAATTCGAACTTTATCCTGC
GCCTGGAGAAGATCGCAAATGCGGCCAAGAAGGACTCCTCCTTCACGCTG
ACGTTCAAGCGATATGATGGCAACGATAAGCCCGTGCCGAGGGAAGGACG
GCCACCGCTGCCCAAGCCGGAGACCTACATGTGCCTGATGCGCGCCCAGT
CCAAGTCCCAAAAAATTTCCACCGTTGTCCGGCAGGAGGATGTGCCCGCC
ATGATGAGCATGTACTCGCAGTTCATGAAGAGCAAGATGGACGGGCTAAA
GCGGGTTAAGAAAGTCAAAAGCAAGGCCAAGGCGACAAAGGGTGCAAGCT
TTCTAGACCAT
BO27538.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:45:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Srp14-RB | 330 | CG5417-PB | 1..327 | 17..343 | 1635 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:45:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Srp14-RB | 464 | CG5417-RB | 51..381 | 13..343 | 1640 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:45:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 20580553..20580681 | 215..343 | 645 | 100 | Plus |
3R | 32079331 | 3R | 20580390..20580490 | 114..214 | 505 | 100 | Plus |
3R | 32079331 | 3R | 20580249..20580325 | 41..117 | 370 | 98.7 | Plus |
Blast to na_te.dros performed on 2014-11-28 02:45:48 has no hits.
BO27538.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-18 15:57:00 Download gff for
BO27538.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Srp14-RB | 42..368 | 17..345 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:21:20 Download gff for
BO27538.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Srp14-RB | 55..381 | 17..345 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:17:54 Download gff for
BO27538.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Srp14-RB | 55..381 | 17..345 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:17:54 Download gff for
BO27538.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 20580169..20580192 | 17..40 | 100 | -> | Plus |
3R | 20580249..20580321 | 41..113 | 100 | -> | Plus |
3R | 20580390..20580490 | 114..214 | 100 | -> | Plus |
3R | 20580553..20580681 | 215..345 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:21:20 Download gff for
BO27538.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 16405891..16405914 | 17..40 | 100 | -> | Plus |
arm_3R | 16405971..16406043 | 41..113 | 100 | -> | Plus |
arm_3R | 16406112..16406212 | 114..214 | 100 | -> | Plus |
arm_3R | 16406275..16406403 | 215..345 | 98 | | Plus |
BO27538.pep Sequence
Translation from 16 to 361
> BO27538.pep
MVLLDNSNFILRLEKIANAAKKDSSFTLTFKRYDGNDKPVPREGRPPLPK
PETYMCLMRAQSKSQKISTVVRQEDVPAMMSMYSQFMKSKMDGLKRVKKV
KSKAKATKGASFLDH
BO27538.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:17:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Srp14-PB | 109 | CG5417-PB | 1..109 | 1..109 | 552 | 100 | Plus |