BO27541.complete Sequence
748 bp assembled on 2010-08-18
GenBank Submission: KX795973
> BO27541.complete
GAAGTTATCAGTCGACATGAGTCTCAGGCAGTTTCAGAACATTTCCCGCC
AGGCCCTCAGGTGCTACTCGATGAGGCGGACCCCTGGCCCCGTCCTCGAG
CTGAGTCGCGGTCAGAGGCAGTGCCTTCGCCTCTGCACCATCATGCTTCC
CGTGAGCTGTGCGGCCACGCCCATGAACGCCATCTCCTCAGCCGCCCAGC
ACTCCACAGCAGCTGCCATCGACATGTCTGCTAACGGAGATTACAAGAAC
GCCGCCTCGATCTACGAGTTCACCGTGAAGGATACCCATGGCAACGATGT
TTCCCTGGAAAAGTACAAGGGCAAGGTGGTCCTGGTGGTGAACATCGCCT
CCAAGTGCGGCCTGACCAAGAACAACTACGAGAAGCTGACGGATCTAAAG
GAGAAGTACGGCGAGCGCGGCCTGGTGATCCTCAACTTCCCGTGCAATCA
GTTTGGGTCCCAGATGCCGGAGGCCGATGGAGAGGCCATGGTGTGCCACC
TGCGCGACTCCAAGGCTGACATCGGCGAGGTGTTCGCCAAGGTCGATGTG
AATGGAGACAATGCGGCGCCGCTGTACAAATACCTAAAGGCCAAGCAGAC
CGGCACCCTGGGCAGCGGAATCAAGTGGAACTTCACCAAGTTTCTGGTGA
ACAAGGAGGGCGTGCCCATCAACCGATATGCCCCGACCACCGATCCCATG
GACATCGCCAAGGACATTGAAAAGCTGCTGGCAAGCTTTCTAGACCAT
BO27541.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:45:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
PHGPx-RD | 717 | CG12013-PD | 1..714 | 17..730 | 3570 | 100 | Plus |
PHGPx-RC | 597 | CG12013-PC | 82..594 | 218..730 | 2565 | 100 | Plus |
PHGPx-RA | 510 | CG12013-PA | 1..507 | 224..730 | 2535 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:45:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
PHGPx-RD | 1014 | CG12013-RD | 114..827 | 17..730 | 3570 | 100 | Plus |
PHGPx-RA | 803 | CG12013-RA | 104..616 | 218..730 | 2565 | 100 | Plus |
PHGPx-RC | 1148 | CG12013-RC | 449..961 | 218..730 | 2565 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:45:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 3327860..3328185 | 218..543 | 1630 | 100 | Plus |
3L | 28110227 | 3L | 3327353..3327553 | 17..217 | 1005 | 100 | Plus |
3L | 28110227 | 3L | 3328249..3328439 | 540..730 | 955 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 02:45:43 has no hits.
BO27541.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-18 15:56:58 Download gff for
BO27541.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
PHGPx-RD | 82..795 | 17..732 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:21:18 Download gff for
BO27541.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
PHGPx-RD | 114..827 | 17..732 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:17:53 Download gff for
BO27541.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
PHGPx-RD | 114..827 | 17..732 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:17:53 Download gff for
BO27541.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 3327353..3327553 | 17..217 | 100 | -> | Plus |
3L | 3327860..3328183 | 218..541 | 100 | -> | Plus |
3L | 3328251..3328439 | 542..732 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:21:18 Download gff for
BO27541.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 3327353..3327553 | 17..217 | 100 | -> | Plus |
arm_3L | 3327860..3328183 | 218..541 | 100 | -> | Plus |
arm_3L | 3328251..3328439 | 542..732 | 98 | | Plus |
BO27541.pep Sequence
Translation from 16 to 748
> BO27541.pep
MSLRQFQNISRQALRCYSMRRTPGPVLELSRGQRQCLRLCTIMLPVSCAA
TPMNAISSAAQHSTAAAIDMSANGDYKNAASIYEFTVKDTHGNDVSLEKY
KGKVVLVVNIASKCGLTKNNYEKLTDLKEKYGERGLVILNFPCNQFGSQM
PEADGEAMVCHLRDSKADIGEVFAKVDVNGDNAAPLYKYLKAKQTGTLGS
GIKWNFTKFLVNKEGVPINRYAPTTDPMDIAKDIEKLLASFLDH
BO27541.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:17:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
PHGPx-PD | 238 | CG12013-PD | 1..238 | 1..238 | 1237 | 100 | Plus |
PHGPx-PC | 198 | CG12013-PC | 28..198 | 68..238 | 897 | 100 | Plus |
PHGPx-PA | 169 | CG12013-PA | 1..169 | 70..238 | 887 | 100 | Plus |
CG15116-PA | 193 | CG15116-PA | 33..191 | 75..238 | 403 | 50.6 | Plus |