BO27547.complete Sequence
733 bp assembled on 2010-08-18
GenBank Submission: KX794861
> BO27547.complete
GAAGTTATCAGTCGACATGAGTATACCTACCGGAATTCCGAACTGTCCGC
GCGGATTGGAGTACCTTACGACTATCGACCAGCTTTTAGTTAAGCAAAAG
GTCGAGCTGCTCGAGGCCTTCACTGGTTTCGAGACCAACAACAAGTTCAC
GATCAAGAACGCCCTGGGTCAGAAGGTCTATTTCGCGGCGGAGGACAACG
ACTGCTGCACGCGCAATTGCTGTGGTCCTGCGCGTCCCTTCGACATGCGG
GTCTTTGATAACTTCCAGCAGGAAGTGATCCACATGCACCGCCCGCTGGC
CTGCTCCTCCTGTCTGTTTCCCTGCTGTCTGCAGAGTATCGAGGTCTCGG
CACCACCCGGCAATGTTATCGGCACCATTGAGCAGGAGTGGTCCATCTGT
TCGCCATCCTTCCGCATCCTCAACCACGTGGGTGACACGGTGATGCGCAT
CGAAGGACCTTTCTGCACCTTTTCGCTCTGCGGCGACGTTGAGTTCAATG
TTGTTTCGCTCACTGGTGAGAAGATAGGCAAGATCTCGAAACAGTGGTCG
GGCCTGGCACGTGAAATTTTCACGGATGCGGACTTCTTCGGCATCAATTT
CCCACTGGACTTGGATGTGCGCATGAAGGCCGTTTTGCTGGGTGCCACAT
TCCTCATAGATGCCATGTTCTTTGAGAAAGCCGGAAACCAAGAGACCGAT
AGGCCCGGAATGCTTGCAAGCTTTCTAGACCAT
BO27547.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:45:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
scramb1-RC | 999 | CG32056-PC | 295..996 | 14..715 | 3495 | 99.9 | Plus |
scramb1-RB | 702 | CG32056-PB | 1..699 | 17..715 | 3495 | 100 | Plus |
scramb1-RA | 1251 | CG32056-PA | 550..1248 | 17..715 | 3495 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:45:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
scramb1-RC | 1640 | CG32056-RC | 348..1049 | 14..715 | 3495 | 99.9 | Plus |
scramb1-RB | 1655 | CG32056-RB | 364..1062 | 17..715 | 3495 | 100 | Plus |
scramb1-RA | 2049 | CG32056-RA | 760..1458 | 17..715 | 3495 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:45:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 10221609..10222093 | 501..17 | 2425 | 100 | Minus |
3L | 28110227 | 3L | 10221393..10221552 | 659..500 | 800 | 100 | Minus |
3L | 28110227 | 3L | 10221076..10221132 | 715..659 | 285 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 02:45:54 has no hits.
BO27547.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-18 15:57:01 Download gff for
BO27547.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
scramb1-RC | 349..1047 | 17..717 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:21:21 Download gff for
BO27547.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
scramb1-RA | 760..1458 | 17..717 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:17:56 Download gff for
BO27547.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
scramb1-RA | 760..1458 | 17..717 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:17:56 Download gff for
BO27547.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 10221074..10221132 | 659..717 | 96 | <- | Minus |
3L | 10221394..10221552 | 500..658 | 100 | <- | Minus |
3L | 10221611..10222093 | 17..499 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:21:21 Download gff for
BO27547.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 10214174..10214232 | 659..717 | 96 | <- | Minus |
arm_3L | 10214494..10214652 | 500..658 | 100 | <- | Minus |
arm_3L | 10214711..10215193 | 17..499 | 100 | | Minus |
BO27547.pep Sequence
Translation from 16 to 733
> BO27547.pep
MSIPTGIPNCPRGLEYLTTIDQLLVKQKVELLEAFTGFETNNKFTIKNAL
GQKVYFAAEDNDCCTRNCCGPARPFDMRVFDNFQQEVIHMHRPLACSSCL
FPCCLQSIEVSAPPGNVIGTIEQEWSICSPSFRILNHVGDTVMRIEGPFC
TFSLCGDVEFNVVSLTGEKIGKISKQWSGLAREIFTDADFFGINFPLDLD
VRMKAVLLGATFLIDAMFFEKAGNQETDRPGMLASFLDH
BO27547.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:17:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
scramb1-PB | 233 | CG32056-PB | 1..233 | 1..233 | 1250 | 100 | Plus |
scramb1-PA | 416 | CG32056-PA | 184..416 | 1..233 | 1250 | 100 | Plus |
scramb1-PC | 332 | CG32056-PC | 101..332 | 2..233 | 1245 | 100 | Plus |
scramb2-PA | 263 | CG1893-PA | 42..263 | 1..221 | 749 | 59.9 | Plus |
CG9084-PB | 275 | CG9084-PB | 67..272 | 13..220 | 236 | 29.1 | Plus |