BO27550.complete Sequence
817 bp assembled on 2010-08-18
GenBank Submission: KX795498
> BO27550.complete
GAAGTTATCAGTCGACATGAGCCACGAGATTCGTTGCTGTAAGGTCTTCA
AAATGAAGGGATCGACGCTGGACAAAATCTCCGCCTTCCTCGGCGAGCTC
ATCGGCACCGGCATCCTGGTCTTCCTGGGCTGCATGGGTTGCGTGAAGAC
GGACCTCTTTCCCAACAACCATCTGCAGATTGTGCTGAACTTCGGCTTCG
CCGTCCTCATCGCCATCCAGTGCTTTGGCTGCGTCTCCGGTGCCCATCTG
AATCCCGCCGTGACCGTGGCCGCCTACATCTACGAGATGGTCACCCTGCG
CATGGCATTTGCCTACTTCGCCGCCCAGATGCTGGGCGCCTTCATCGGCT
ACGGCCTGCTCATGGTCCTGCTTCCCTCGCCCACACTTACGGTGGGCGCT
GGGCTCTGCGTGACCTTGCCCCACACCAGCGTAACCACGGGCCAGGCCCT
CGGCATCGAGTTCGTAATCACCTCCATCCTGGTCATCGTCTGCTGCGGAG
TGTGGGATCCGCGCAACTCCAAGTTCCATGACTCCGTGGGCATTCGATTT
GGCCTGGCCATCGCCTGTCTCGCCTGCGCTGCCGGTCCCTTCACCGGCGG
CAGCATGAACCCGGCCAGGTCGTTCGCCCCCGCCCTGTGGAACAAGCACT
TCGAGAGCAACTGGATCTACTGGCTGGCCCCGCTGAGCTCCTCCGCCATC
ACCGCCTACGCCTACAAGGTCGTCTTCCGCCGCGAGGTGGTTGAGGCGGA
GATCACCTCCAATGAGAAGCTGCGGCAACTGGAGGACGTCCAGCTGTCGG
CAAGCTTTCTAGACCAT
BO27550.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:45:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4019-RC | 786 | CG4019-PC | 1..783 | 17..799 | 3915 | 100 | Plus |
| CG4019-RF | 894 | CG4019-PF | 125..891 | 33..799 | 3835 | 100 | Plus |
| CG4019-RE | 861 | CG4019-PE | 92..858 | 33..799 | 3835 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:45:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4019-RC | 1138 | CG4019-RC | 112..894 | 17..799 | 3915 | 100 | Plus |
| CG4019-RF | 1271 | CG4019-RF | 261..1027 | 33..799 | 3835 | 100 | Plus |
| CG4019-RE | 1183 | CG4019-RE | 173..939 | 33..799 | 3835 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:45:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 23608131..23608682 | 584..33 | 2760 | 100 | Minus |
| 2R | 25286936 | 2R | 23607836..23608051 | 799..584 | 1080 | 100 | Minus |
| 2R | 25286936 | 2R | 23604625..23604800 | 360..185 | 400 | 81.8 | Minus |
| 2R | 25286936 | 2R | 23606358..23606443 | 275..190 | 205 | 82.6 | Minus |
Blast to na_te.dros performed 2014-11-28 02:45:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| diver2 | 4917 | diver2 DIVER2 4917bp | 4100..4150 | 807..755 | 116 | 71.7 | Minus |
BO27550.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-18 15:56:55 Download gff for
BO27550.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4019-RC | 102..884 | 17..801 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:21:14 Download gff for
BO27550.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4019-RC | 112..894 | 17..801 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:17:49 Download gff for
BO27550.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4019-RC | 112..894 | 17..801 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:17:49 Download gff for
BO27550.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 23607834..23608051 | 584..801 | 99 | <- | Minus |
| 2R | 23608132..23608681 | 34..583 | 100 | <- | Minus |
| 2R | 23609414..23609430 | 17..33 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:21:14 Download gff for
BO27550.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 19495357..19495574 | 584..801 | 99 | <- | Minus |
| arm_2R | 19495655..19496204 | 34..583 | 100 | <- | Minus |
| arm_2R | 19496937..19496953 | 17..33 | 100 | | Minus |
BO27550.pep Sequence
Translation from 16 to 817
> BO27550.pep
MSHEIRCCKVFKMKGSTLDKISAFLGELIGTGILVFLGCMGCVKTDLFPN
NHLQIVLNFGFAVLIAIQCFGCVSGAHLNPAVTVAAYIYEMVTLRMAFAY
FAAQMLGAFIGYGLLMVLLPSPTLTVGAGLCVTLPHTSVTTGQALGIEFV
ITSILVIVCCGVWDPRNSKFHDSVGIRFGLAIACLACAAGPFTGGSMNPA
RSFAPALWNKHFESNWIYWLAPLSSSAITAYAYKVVFRREVVEAEITSNE
KLRQLEDVQLSASFLDH
BO27550.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:17:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4019-PC | 261 | CG4019-PC | 1..261 | 1..261 | 1364 | 100 | Plus |
| CG4019-PF | 297 | CG4019-PF | 38..297 | 2..261 | 1335 | 98.5 | Plus |
| CG4019-PE | 286 | CG4019-PE | 32..286 | 7..261 | 1333 | 100 | Plus |
| CG4019-PB | 249 | CG4019-PB | 1..249 | 13..261 | 1295 | 100 | Plus |
| CG4019-PD | 249 | CG4019-PD | 1..249 | 13..261 | 1295 | 100 | Plus |
