BO27558.complete Sequence
1087 bp assembled on 2010-09-23
GenBank Submission: KX800131
> BO27558.complete
GAAGTTATCAGTCGACATGCACATATGCATATACATGTCTATGTATAAGG
GTGGTCGGACACCTTCTATTAGGTCCAGTGAAAGGCGTCGTCCTCAAAGT
GTTTCATCTATATCCACACTATCCCCGAGAGTTGTTTTGTCCAGATTGGA
GCCGAGGGAGTTTGAACGTCTTCGACTATCCTACAAAATTGCAATCGACC
AAAGAAGATCCAGAAGCTGCCGTGGCATGAACATGGGTCAAAAAATTAGT
GGCGGAGTCAAAACAGTTAGTCGCAATGATTCACAGTCTACATTTAAACC
AATAATACCAAGAGAGTTGCAAGCTGATTTCGTTAAACCAGCGCGAATCG
ATATATTACTTGATATGCCGCCAGCATCTCGAGATCTTCAATTGAAGCAT
TCATGGAACTCCGAAGATCGGTCTCTTAACATTTTTGTAAAAGAGGACGA
CAAGTTGACATTTCATAGGCACCCAGTGGCTCAAAGTACTGACTGTATTC
GCGGAAAAGTCGGACTTACAAAGGGATTGCATATTTGGGAAATTTATTGG
CCAACAAGGCAAAGAGGAACCCACGCTGTTGTTGGCGTATGCACTGCAGA
TGCACCTTTACATTCAGTTGGCTACCAAAGTTTAGTTGGATCAACTGAAC
AAAGTTGGGGCTGGGACTTAGGAAGAAATAAATTATACCATGACTCAAAA
AACTGCGCTGGAGTGACATATCCAGCAATTCTTAAAAACGACGAAGCTTT
TTTAGTTCCAGATAAGTTCTTAGTAGCGTTAGATATGGACGAAGGAACAC
TAAGCTTCATTGTTGATCAGCAGTACCTCGGTATTGCGTTTAGAGGACTG
CGAGGGAAAAAACTATATCCAATTGTTTCGGCGGTCTGGGGACACTGTGA
AATAACAATGCGTTACATTGGTGGATTAGATCCCGAACCCTTGCCCCTAA
TGGATCTTTGCCGAAGAACAATTCGTCAAAAAATTGGTCGCACAAACTTG
GAGGAGCACATTCAACAGCTTCAACTTCCTTTATCAATGAAAACATATTT
ATTGTATAAAAACCGTAGAGCAAGCTTTCTAGACCAT
BO27558.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 08:00:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| gus-RM | 840 | CG2944-PM | 1..837 | 233..1069 | 4185 | 100 | Plus |
| gus-RL | 840 | CG2944-PL | 1..837 | 233..1069 | 4185 | 100 | Plus |
| gus-RK | 840 | CG2944-PK | 1..837 | 233..1069 | 4185 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 08:00:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| gus-RM | 1525 | CG2944-RM | 139..1191 | 17..1069 | 5265 | 100 | Plus |
| gus-RK | 1813 | CG2944-RK | 308..1360 | 17..1069 | 5265 | 100 | Plus |
| gus-RI | 2040 | CG2944-RI | 308..1364 | 17..1069 | 5190 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 08:00:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 5120763..5121652 | 932..43 | 4450 | 100 | Minus |
| 2R | 25286936 | 2R | 5117666..5117802 | 1069..933 | 685 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 08:00:31 has no hits.
BO27558.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-09-23 10:58:49 Download gff for
BO27558.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| gus-RE | 311..1363 | 17..1071 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:30:41 Download gff for
BO27558.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| gus-RK | 308..1360 | 17..1071 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:08:55 Download gff for
BO27558.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| gus-RK | 308..1360 | 17..1071 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:08:55 Download gff for
BO27558.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 5117664..5117802 | 933..1071 | 98 | <- | Minus |
| 2R | 5120763..5121652 | 43..932 | 100 | <- | Minus |
| 2R | 5121773..5121798 | 17..42 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:30:41 Download gff for
BO27558.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 1005169..1005307 | 933..1071 | 98 | <- | Minus |
| arm_2R | 1008268..1009157 | 43..932 | 100 | <- | Minus |
| arm_2R | 1009278..1009303 | 17..42 | 100 | | Minus |
BO27558.pep Sequence
Translation from 16 to 1087
> BO27558.pep
MHICIYMSMYKGGRTPSIRSSERRRPQSVSSISTLSPRVVLSRLEPREFE
RLRLSYKIAIDQRRSRSCRGMNMGQKISGGVKTVSRNDSQSTFKPIIPRE
LQADFVKPARIDILLDMPPASRDLQLKHSWNSEDRSLNIFVKEDDKLTFH
RHPVAQSTDCIRGKVGLTKGLHIWEIYWPTRQRGTHAVVGVCTADAPLHS
VGYQSLVGSTEQSWGWDLGRNKLYHDSKNCAGVTYPAILKNDEAFLVPDK
FLVALDMDEGTLSFIVDQQYLGIAFRGLRGKKLYPIVSAVWGHCEITMRY
IGGLDPEPLPLMDLCRRTIRQKIGRTNLEEHIQQLQLPLSMKTYLLYKNR
RASFLDH
BO27558.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-26 14:33:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| gus-PM | 279 | CG2944-PM | 1..279 | 73..351 | 1486 | 100 | Plus |
| gus-PL | 279 | CG2944-PL | 1..279 | 73..351 | 1486 | 100 | Plus |
| gus-PK | 279 | CG2944-PK | 1..279 | 73..351 | 1486 | 100 | Plus |
| gus-PJ | 279 | CG2944-PJ | 1..279 | 73..351 | 1486 | 100 | Plus |
| gus-PI | 279 | CG2944-PI | 1..279 | 73..351 | 1486 | 100 | Plus |
