BO27562.complete Sequence
2770 bp assembled on 2010-09-13
GenBank Submission: KX796168
> BO27562.complete
GAAGTTATCAGTCGACATGTGCACTGAGGTGAATTCCGCGATGGGTCTTC
AAGCAACAGCCGCCACCAAGCGGAAGCATGAGCTGACCTTCGACAGCAAG
GATGCCAACACCACCTACACGGGCAACTGTGCCCCGCCCCCCGTCAAGGC
CAACAAGTGGGCCATCAGCAACAACAACTACCTGGAGTCGCTCGAGGAGC
AGCAGCAGCAACAGCAATCGCCATCGGAGCCAGCTGTTGAGTCCAACAAC
AACCACATTGTTTTAGAAGCATCAATGGATGCGTTGAAGCCAACGGAGCC
AAGTATTAGCAATGGTCATGAAGTTACTACCGCCGTCGCAGCAATGAAAA
GTCAAGCGGAGGTGCCACTCCCGCCAACAGCGAGTGCGGCGATACCGGAG
GACAGTATCGCCAGGTTAGAGGTGGTCACCTCAGCCGTTCCTTGTGAGCC
CTGGACGAGCAATGGGCCCACTACTCCTTCCGCGGTGGCAGGACCCGCAG
CATCCGCGGAACCTGTGGATTGCATCTCCAAGCTGCAGGCCGTCGCGGTG
CCCAGTGATCCTTGGGGTAGCATTGCCACCCGCTCCACTCTGGCAACGAC
TTTGCTCAGTGCCGATGAGCTGGACGACGATGATGATGATTTTGAGGACG
ACTACGAGGAGGAGGAGAGCATCATACCCACCTACTGTCCCATGCGCTAT
CATCCCTTTGTACCGCATCCGCACCCTCATTCGCACCAGCTGCCGTCCCA
TCCCCACCAGCAGCAGCCGCAGCAGCTCTCCCAACAACAACCACATCCCC
AGCAGCAGCAACTCGCCCAGCAGCAGCAACAACATCCGCAGCAGCAGCGA
AGCTATGCCCCCGGATATGGGAGCAGGCAACCCAACTACTATTCGGAGCC
TTTCCCGCAGCAGAATTGCTCGCGGACAGGAGGACCGCAGCACATGACGC
AATCACCGCCAACACCGCAGCAGGCGCGTGGTTTCGCTCCACCCCAGTGG
GCGACAGCGGGTAGCAGTCCGGCCAATCCCTCATCGGGAGCCCAACAGTT
CTACGAGCCGACCAACGGTGGAGCTTATGCCCCGCCAGCGGCGCCCCAGC
AGACAATTCGTTGTGCAGAGAACGGCAAATCCTATCTGGACCTGGGCTGC
AGCAGTGGCGCATCCGGAAATGCTGGAGGATCGCCCATCAGTCCGCCGCC
CTCATCAGCGCCTGTTGTTCCATTCGCCGGCTTGCCTCTCCATGGCCTGC
CTCTTAAAAGGTGCTGCGATGGACGACCCGGTGGCTGGTGCAGTGCCAAC
AGGAGTTGCTACAAGGACACGCGCCTGAAGATACGCAATCTGTCCATGTT
CAAACTCTCCCGTTTCCGGCAGGTTTCTGAGCAGTCGCTGTACCGCTCGG
TGCTCATTTGCAATACGCTGAAGCGCATTGATCGGGAGATCGAAGCAGAG
GCCAAGGAGCTGCACCAGGCGGCGCAACAGCACCACCAACAGGCGGCAGC
AGCAGCAGCCGCAGCAGCAGCAGCGGCGGCACAAGCGGCTCAGTACCACC
CAGCCTACCAGCAGCAGCAGCAGCAGCAGCAATCCCCGCCAGCACCTCTG
CATCCACATACGCAGCAGCAGATGGACTATGCGCCCGTGTTGAACTGTGC
TCGTTTGGCCAACATGGATCACTACCAGCAACTCAGTTTCCAGCCCCAAC
ACCAGCAGCAACAGCAGCCTTCGCAGCCGCATAGCTACCACGAGCGTCTG
GACAGCCAACCCGCCTACAGGGGCGCGGCAGCGGGTGCGGGCAGCTTCGC
CACGCAGCCGAGCAACTGTGATACATCAGCGGGTGCAAGTAGCAGCAATA
CCAGCGGCAACAGCAACAACTCCTCAGCGACGGCGGCGAGCAGCAACAGT
AGTTTGCACCCCTACGATCACTATCCCTTTCGGGAGTCGCAATCTGGTCG
AGCAACGCCCTTTCCGGCCTGCCCCACCACAACAGCAGCAGCGGCAGCAG
CTTCGGCAGCAGCCGCAGCTTCCAGTGGAGGAGCAGCAACAACACTAAGT
AGCAACATCAGCAGCTCCCCCGCATCAAGCAGCACTAGCAGCAACACCAC
TTCCTCAACGGTGATCAGCAGCAGTAGTGGGAATACCGTGAGCAGCAACG
GCACCACGCCAGTTGCACCTACCGCAAGCAGCAGCAACTGCGATACTAGC
GATTCGGGTTATGCGGACGACGACTCCACGCGATCCATCAACTGGAGTTC
GGTGCTGAGCCTCAGTTCGCAATCGGCGTTGGATCCGCTCAACAACAACG
ATTTGTTTAGCATACTTCCGTCGGCGGCCACACCTACAGCGGTGCCAGTT
TCAGTGCCAGCCAGTAGTTCCAGTTCCTCCTCGGGGTCCACGCTGGCATT
CAGTGGAAGCTTCACCACCGTACAAGCCAGCGGCGGCAGTAGCAGTTCCT
GCGGAAGCAGCTCCACCACCGCCACATTCACCACCCTGTCGACCATCTCC
TCGGCCACCCACTCGCTGACCTCGTCGTATGTAAGCAGCATTAGCTCCAA
TGTGTCGGCGGGCGCCAATACCTGGGAGTACGGATTCCTGGACATGGAAT
TCGGACTCGGTTCGGAGTTCACGGAGCTGGTACCCAGCTGTAAGCTCAGC
TCCGAGGATCTGTTCAAGAGCGGATTGGGCGGTCAGGTTGTGACCGCCTC
CCGCCTGCACGACAACGAACTGGAGCACCCGGCCCACATCATGGTCGGTA
GTGCAAGCTTTCTAGACCAT
BO27562.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 05:12:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| tara-RB | 2739 | CG6889-PB | 1..2736 | 17..2752 | 13680 | 100 | Plus |
| tara-RA | 2751 | CG6889-PA | 25..2748 | 29..2752 | 13620 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:12:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| tara-RB | 4066 | CG6889-RB | 503..3238 | 17..2752 | 13680 | 100 | Plus |
| tara-RA | 4341 | CG6889-RA | 790..3513 | 29..2752 | 13620 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 05:12:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 16256776..16259501 | 27..2752 | 13630 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 05:12:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2292..3014 | 1448..2205 | 381 | 56 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2401..2982 | 1458..2065 | 377 | 56.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2310..2552 | 1969..2204 | 322 | 64.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6749..6926 | 1977..2158 | 298 | 66.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2311..2664 | 1838..2188 | 293 | 58.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6725..7112 | 1691..2095 | 243 | 57.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6719..6995 | 1834..2109 | 240 | 59.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6723..6872 | 2048..2200 | 226 | 67.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2313..2685 | 1691..2083 | 218 | 56.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6730..7007 | 1823..2095 | 208 | 58.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6724..7028 | 1791..2109 | 202 | 55.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2352..2665 | 1824..2156 | 189 | 56.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2311..2421 | 2078..2188 | 166 | 65.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6722..6823 | 1512..1621 | 161 | 66.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6798..6866 | 1838..1903 | 157 | 73.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6795..7008 | 1668..1871 | 150 | 59.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6773..7217 | 1660..2111 | 141 | 55 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1527..1584 | 1660..1718 | 130 | 71.2 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1087..1142 | 1666..1718 | 128 | 75 | Plus |
BO27562.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-09-16 10:43:42 Download gff for
BO27562.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| tara-RB | 500..3235 | 17..2754 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:25:37 Download gff for
BO27562.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| tara-RB | 500..3235 | 17..2754 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 06:06:14 Download gff for
BO27562.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| tara-RB | 503..3238 | 17..2754 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 06:06:14 Download gff for
BO27562.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 16256776..16259501 | 27..2754 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:25:37 Download gff for
BO27562.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 12082498..12085223 | 27..2754 | 99 | | Plus |
BO27562.pep Sequence
Translation from 16 to 2770
> BO27562.pep
MCTEVNSAMGLQATAATKRKHELTFDSKDANTTYTGNCAPPPVKANKWAI
SNNNYLESLEEQQQQQQSPSEPAVESNNNHIVLEASMDALKPTEPSISNG
HEVTTAVAAMKSQAEVPLPPTASAAIPEDSIARLEVVTSAVPCEPWTSNG
PTTPSAVAGPAASAEPVDCISKLQAVAVPSDPWGSIATRSTLATTLLSAD
ELDDDDDDFEDDYEEEESIIPTYCPMRYHPFVPHPHPHSHQLPSHPHQQQ
PQQLSQQQPHPQQQQLAQQQQQHPQQQRSYAPGYGSRQPNYYSEPFPQQN
CSRTGGPQHMTQSPPTPQQARGFAPPQWATAGSSPANPSSGAQQFYEPTN
GGAYAPPAAPQQTIRCAENGKSYLDLGCSSGASGNAGGSPISPPPSSAPV
VPFAGLPLHGLPLKRCCDGRPGGWCSANRSCYKDTRLKIRNLSMFKLSRF
RQVSEQSLYRSVLICNTLKRIDREIEAEAKELHQAAQQHHQQAAAAAAAA
AAAAAQAAQYHPAYQQQQQQQQSPPAPLHPHTQQQMDYAPVLNCARLANM
DHYQQLSFQPQHQQQQQPSQPHSYHERLDSQPAYRGAAAGAGSFATQPSN
CDTSAGASSSNTSGNSNNSSATAASSNSSLHPYDHYPFRESQSGRATPFP
ACPTTTAAAAAASAAAAASSGGAATTLSSNISSSPASSSTSSNTTSSTVI
SSSSGNTVSSNGTTPVAPTASSSNCDTSDSGYADDDSTRSINWSSVLSLS
SQSALDPLNNNDLFSILPSAATPTAVPVSVPASSSSSSSGSTLAFSGSFT
TVQASGGSSSSCGSSSTTATFTTLSTISSATHSLTSSYVSSISSNVSAGA
NTWEYGFLDMEFGLGSEFTELVPSCKLSSEDLFKSGLGGQVVTASRLHDN
ELEHPAHIMVGSASFLDH
BO27562.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-26 14:29:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| tara-PB | 912 | CG6889-PB | 1..912 | 1..912 | 4760 | 100 | Plus |
| tara-PA | 916 | CG6889-PA | 7..916 | 3..912 | 4737 | 99.8 | Plus |
| Mur29B-PA | 555 | CG31901-PA | 212..475 | 587..852 | 215 | 30.3 | Plus |
| cpo-PY | 606 | CG43738-PY | 189..416 | 476..702 | 213 | 30.2 | Plus |
| cpo-PX | 606 | CG43738-PX | 189..416 | 476..702 | 213 | 30.2 | Plus |
| Mur29B-PA | 555 | CG31901-PA | 156..469 | 579..879 | 210 | 27.6 | Plus |
| Mur29B-PA | 555 | CG31901-PA | 148..410 | 587..852 | 209 | 28.1 | Plus |
| Mur29B-PA | 555 | CG31901-PA | 116..378 | 587..852 | 208 | 28.4 | Plus |
| Mur29B-PA | 555 | CG31901-PA | 92..346 | 595..852 | 198 | 27.9 | Plus |
| cpo-PY | 606 | CG43738-PY | 158..440 | 483..736 | 197 | 27.3 | Plus |
| Mur29B-PA | 555 | CG31901-PA | 90..309 | 602..844 | 190 | 30.5 | Plus |
| Mur29B-PA | 555 | CG31901-PA | 87..282 | 654..852 | 188 | 31.5 | Plus |
| Mur29B-PA | 555 | CG31901-PA | 108..356 | 603..852 | 188 | 27.4 | Plus |
| Mur29B-PA | 555 | CG31901-PA | 242..485 | 587..834 | 179 | 26.8 | Plus |
