BO27566.complete Sequence
2356 bp assembled on 2010-09-13
GenBank Submission: KX799967
> BO27566.complete
GAAGTTATCAGTCGACATGAGTCAAAATGTGGCCGACAGTTTGCCCACGT
GGCGCCTTTGGGGCGAAGAGCACGAGAAGAATGCAATTTTCACCGTTTAC
CTGAAGAAAGTGCGATACCACCGACCGACGCCCACAGCCAGCAATGACTC
AGATGATGAGATTTCCCATCTGGAGTGGGAGACTGTACGCGTGCGTTTCG
TTAAGGCGGCTACATTGGCTCGATTGGTGGAGGCGTTAGCCACCGACGAC
GGCGAGCTGGAGTCCACCTTCATCAACGTGTTCCTGTCCACATATCGCAC
CTTCTCCACACCCAAGCAGGTGCTCAGTCTGCTGACGCAACGGTACGATG
CTCTGCATGAGAAGCACCTGGAGGAGTTGGAGCAGGCACAGCAAAATGGA
CAGGTCATGGATCCCGCCTACGATCCACACGCCTCCATTCACGAGCAGCA
CAAGAAAACCCTAGTCTCAGCGCTGCACGTCTGGCTGGATGGATTCCCGG
AGGATTGGCACGAGGATAACCTGCAACAGATCTTGGCATTTGCCACCAAG
CGGCTGAAACGATCCGATCTGCACATCAAGGTGCTGAATCGTCTGGAACG
GCTCATCAAACAGTCTCTCTATGGAAATGGAGGAGGAAGCGGTGGCTCGG
AGAACAATGGTCATTCGTGGCTTTCCGCAGCGCGCTCACAACAGATGCAG
CAATTCATGATTCCCACTCACTATGGCTCTTCGTATGACCTCACGGATCA
GTTCAATGGCATGTACCTCTCGCCAATGGGCCACGGGCCCATCTATCGTG
GACCTACCCACTTTCTGCAGGCATTCCGTTTTCCGCATGTGCCCGTCCGG
CATTTTGCTGAGCAGTTGACCCGTATGGATACGGAACTCTTTAAGCGACT
GATTCCCCACCAGTGCCTCGGACACACGTGGGCACGACGTGATAGTGGAG
GATCCGAGACTGTGGTGGCCACCATCAACCAGTTTAATGCAGTGCTCTTC
CGGGTGGTGTCCAGTATCCTGATCGATCGCCTGAAACCTCAGGAGCGCGC
TCTGAACATTTCACGATGGATTGATATTGCCCAAGAGTTGCGCATGCTCA
AAAACTTTAGTTCGCTCAAGGCCATCATTTCGGCTCTAAACTCCAATTCA
ATATACCGCCTCTCCAAGATCTGGGAAGTGCTGCCTAAAGAAAGGATGGA
AGTCTTTACGGAGCTGGCGAATATTTGCTCGGAGGATAACAATGCTTGGA
CTCTGCGAGAAGTGTTGAAACGAGAAGGAACGGCCAAAAATCCAGATCCA
GGCAGTGATCACAGCGATAGGCATCTGCAGAAGCTTATTCTGAATTTGGG
AACACAAACATCGCATGGAACGATACCCTATTTGGGTACATTCCTTACCG
ACCTGACCATGATCCATACGGCCAATCCGGACTACCTCACCGAGAATAAG
CTCATAAACTTCGACAAGAAGCGCAAGGAGTTCGAAGTTCTGGCCCAGAT
CAAGTTACTTCAGGGAGCAGCTAACACATATAATCTCCAGGCGGATGCGC
TCTTTGATCATTGGTTCAACTCAATGCCAGTGTTTGATGAGCGTGAAGCC
TTTGAGCTGAGTTGTCGACTGGAACCACCACCGCCGGCGCCACGGAAATC
GGTGGTCAGCACTAACACCTCTTTAACAAACACGACCGCCTCATCGACGG
CTTCTATTATGGGCCACCGCAAGACTGACTCCATACACTCGAATTCGAGC
AGCGGAGCGGGATCACAGTTCTACTGCGAACTAAACAGTAGTACCAGCTC
CAGACATAACTCCTTGGATCGGGATGTCCACCATCAGCACGCCTCCTTGA
TGTCCGCCTCGAGTAGTGTGTCCAATCTGTCGTTGGACTCCAGTAACTCC
GGCGGTCGGCAGTCCGGCAAGCTGACCCACTCTCAGTCTATGGGAAATGG
TCTGAAATCTCACGGAAATGGCACTACGAATGGTGGATCGCCCCATATCA
ATGCTCAGTTGGTGCAACCATCAAGTGGAACCCCTCACTCTGCTCCCGAT
TTCTATATCATTCGGGTGACCTATGAAACAGACAACATCGAGCTGGATGG
GATTGTGCTGTACAAGAGTATTATGCTGGGAAATAACGAGCGCACGCCGC
AGGTTATCCGAAATGCGATGCTTAAATTGGGTCTGGAGGATGATCCGGAT
AGGTTTACTTTGGCGCAGGTCCTACCCGATAAGGAACTGGTGATGCCGAA
GAATGCGAATGTCTACTACGCGGTTAACACAAACTACAACCTCAACTTCA
TCCTAAGACCGCGAAAGGAAGAGGGTGTGGCAGGAAGCGCAAGCTTTCTA
GACCAT
BO27566.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 05:10:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rgl-RC | 2325 | CG8865-PC | 1..2322 | 17..2338 | 11595 | 100 | Plus |
| Rgl-RD | 2325 | CG8865-PD | 1..2322 | 17..2338 | 11595 | 100 | Plus |
| Rgl-RB | 2325 | CG8865-PB | 1..2322 | 17..2338 | 11595 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:10:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rgl-RC | 3754 | CG8865-RC | 503..2824 | 17..2338 | 11595 | 100 | Plus |
| Rgl-RD | 3865 | CG8865-RD | 614..2935 | 17..2338 | 11595 | 100 | Plus |
| Rgl-RB | 3939 | CG8865-RB | 688..3009 | 17..2338 | 11595 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 05:10:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 13907827..13908970 | 2338..1195 | 5705 | 99.9 | Minus |
| 3L | 28110227 | 3L | 13909255..13909772 | 1043..526 | 2590 | 100 | Minus |
| 3L | 28110227 | 3L | 13909832..13910215 | 529..146 | 1920 | 100 | Minus |
| 3L | 28110227 | 3L | 13909031..13909186 | 1195..1040 | 780 | 100 | Minus |
| 3L | 28110227 | 3L | 13910483..13910586 | 146..43 | 520 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 05:10:08 has no hits.
BO27566.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-09-16 10:43:41 Download gff for
BO27566.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rgl-RC | 503..2824 | 17..2340 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:25:29 Download gff for
BO27566.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rgl-RB | 688..3009 | 17..2340 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 06:05:19 Download gff for
BO27566.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rgl-RB | 688..3009 | 17..2340 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 06:05:19 Download gff for
BO27566.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 13910484..13910585 | 44..145 | 100 | <- | Minus |
| 3L | 13921699..13921725 | 17..43 | 100 | | Minus |
| 3L | 13907825..13908969 | 1196..2340 | 99 | <- | Minus |
| 3L | 13909031..13909183 | 1043..1195 | 100 | <- | Minus |
| 3L | 13909256..13909768 | 530..1042 | 100 | <- | Minus |
| 3L | 13909832..13910215 | 146..529 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:25:29 Download gff for
BO27566.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 13900925..13902069 | 1196..2340 | 99 | <- | Minus |
| arm_3L | 13902131..13902283 | 1043..1195 | 100 | <- | Minus |
| arm_3L | 13902356..13902868 | 530..1042 | 100 | <- | Minus |
| arm_3L | 13902932..13903315 | 146..529 | 100 | <- | Minus |
| arm_3L | 13903584..13903685 | 44..145 | 100 | <- | Minus |
| arm_3L | 13914799..13914825 | 17..43 | 100 | | Minus |
BO27566.pep Sequence
Translation from 16 to 2356
> BO27566.pep
MSQNVADSLPTWRLWGEEHEKNAIFTVYLKKVRYHRPTPTASNDSDDEIS
HLEWETVRVRFVKAATLARLVEALATDDGELESTFINVFLSTYRTFSTPK
QVLSLLTQRYDALHEKHLEELEQAQQNGQVMDPAYDPHASIHEQHKKTLV
SALHVWLDGFPEDWHEDNLQQILAFATKRLKRSDLHIKVLNRLERLIKQS
LYGNGGGSGGSENNGHSWLSAARSQQMQQFMIPTHYGSSYDLTDQFNGMY
LSPMGHGPIYRGPTHFLQAFRFPHVPVRHFAEQLTRMDTELFKRLIPHQC
LGHTWARRDSGGSETVVATINQFNAVLFRVVSSILIDRLKPQERALNISR
WIDIAQELRMLKNFSSLKAIISALNSNSIYRLSKIWEVLPKERMEVFTEL
ANICSEDNNAWTLREVLKREGTAKNPDPGSDHSDRHLQKLILNLGTQTSH
GTIPYLGTFLTDLTMIHTANPDYLTENKLINFDKKRKEFEVLAQIKLLQG
AANTYNLQADALFDHWFNSMPVFDEREAFELSCRLEPPPPAPRKSVVSTN
TSLTNTTASSTASIMGHRKTDSIHSNSSSGAGSQFYCELNSSTSSRHNSL
DRDVHHQHASLMSASSSVSNLSLDSSNSGGRQSGKLTHSQSMGNGLKSHG
NGTTNGGSPHINAQLVQPSSGTPHSAPDFYIIRVTYETDNIELDGIVLYK
SIMLGNNERTPQVIRNAMLKLGLEDDPDRFTLAQVLPDKELVMPKNANVY
YAVNTNYNLNFILRPRKEEGVAGSASFLDH
BO27566.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-26 14:28:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rgl-PC | 774 | CG8865-PC | 1..774 | 1..774 | 4046 | 100 | Plus |
| Rgl-PD | 774 | CG8865-PD | 1..774 | 1..774 | 4046 | 100 | Plus |
| Rgl-PB | 774 | CG8865-PB | 1..774 | 1..774 | 4046 | 100 | Plus |
| Rgl-PE | 973 | CG8865-PE | 182..956 | 2..776 | 4010 | 99 | Plus |
| Rgl-PA | 954 | CG8865-PA | 182..954 | 2..774 | 4007 | 99.1 | Plus |
