BO27574.complete Sequence
982 bp assembled on 2010-08-18
GenBank Submission: KX796087
> BO27574.complete
GAAGTTATCAGTCGACATGTATGTGAAATATCCCATGGCTGAGGTGCAGT
TGGTGAACGATCTTCTCCTCGATCTGCGGCACATGAAAAAAGATTGTCTG
GAACTGCTGCAGCGCAAGGTGGACGATCTGTCAGATACACAGAATATAGC
TGAGGATCGGACAACCCGCACCAAGACCGAATATGCAGTCCTTCAGGCGC
GTTATCACATGCTCGAAGAGCAGTACCGAGAGTCGGAACTGCGTGCCGAG
GAGCGTTTGGCAGAGGAGCAGAAGCGGCACCGCGAGATTTTGGCCCGCGT
GGAGCGTGAAGCCTCGCTGCAGAACGAGAACTGCCAGATGAAGATCCGTG
CCACCGAGATCGAGGCAACGGCACTGCGGGAAGAAGCCGCCCGACTGCGT
GTCCTGTGTGACAAGCAGGCCAATGACCTCCATCGCACCGAGGAACAGTT
GGAGCTGGCGCGCGACCAAATCGGCGTCCTGCAACAGGAGCACGAGGAGC
AGGCACAGGCACTGCGCCGCCACGAACAGGAGAAGAAGTCCACCGAGGAG
CTGATGCTGGAGCTGGGCCGGGAACTGCAGCGTGCTCGCGAGGAGAGTGG
AGCCCGGGCAATGCCGACCACATCGCCGGAGAGCATAAGACTGGAGGAGC
TGCATCAGGAGCTCGAGGAGATGCGCCAGAAGAACCGAACCCTCGAAGAA
CAGAACGAGGAGCTGCAGGCCACGATGCTGACCAACCAGGCCACCATGCT
GACAAATGGCGTGGAGCAGGGTCGCCATCTGCTGAACGGAACACTCAACA
GTTTGGCTCAGGAGCTCGAGGAGATGTCACAAGCCCAGCTACAACAGGCC
TTCCAGGAAAAGGAGGATGAAAATGTTCGGCTTAAGCACTATATTGATAC
CATTCTACTCAACATCGTGGAGAACTATCCTCAATTGCTGGAAGTCAAGC
CCATGGAGCGAAAGGCAAGCTTTCTAGACCAT
BO27574.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:44:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| nuf-RD | 951 | CG33991-PD | 1..948 | 17..964 | 4740 | 100 | Plus |
| nuf-RF | 1587 | CG33991-PF | 718..1584 | 98..964 | 4335 | 100 | Plus |
| nuf-RE | 1587 | CG33991-PE | 718..1584 | 98..964 | 4335 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:44:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| nuf-RD | 2448 | CG33991-RD | 303..1250 | 17..964 | 4740 | 100 | Plus |
| nuf-RF | 3099 | CG33991-RF | 1035..1901 | 98..964 | 4335 | 100 | Plus |
| nuf-RE | 3233 | CG33991-RE | 1169..2035 | 98..964 | 4335 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:44:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 14230654..14231112 | 231..689 | 2295 | 100 | Plus |
| 3L | 28110227 | 3L | 14231177..14231325 | 690..838 | 745 | 100 | Plus |
| 3L | 28110227 | 3L | 14230176..14230310 | 98..232 | 675 | 100 | Plus |
| 3L | 28110227 | 3L | 14231924..14232052 | 836..964 | 645 | 100 | Plus |
| 3L | 28110227 | 3L | 14230026..14230106 | 17..97 | 405 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 02:44:38 has no hits.
BO27574.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-18 15:56:42 Download gff for
BO27574.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| nuf-RD | 301..1248 | 17..966 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:20:55 Download gff for
BO27574.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| nuf-RD | 303..1250 | 17..966 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:17:29 Download gff for
BO27574.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| nuf-RD | 303..1250 | 17..966 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:17:29 Download gff for
BO27574.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 14230026..14230106 | 17..97 | 100 | -> | Plus |
| 3L | 14230176..14230310 | 98..232 | 100 | -> | Plus |
| 3L | 14230656..14231112 | 233..689 | 100 | -> | Plus |
| 3L | 14231177..14231325 | 690..838 | 100 | -> | Plus |
| 3L | 14231927..14232052 | 839..966 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:20:55 Download gff for
BO27574.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 14223276..14223410 | 98..232 | 100 | -> | Plus |
| arm_3L | 14223126..14223206 | 17..97 | 100 | -> | Plus |
| arm_3L | 14223756..14224212 | 233..689 | 100 | -> | Plus |
| arm_3L | 14224277..14224425 | 690..838 | 100 | -> | Plus |
| arm_3L | 14225027..14225152 | 839..966 | 98 | | Plus |
BO27574.pep Sequence
Translation from 16 to 982
> BO27574.pep
MYVKYPMAEVQLVNDLLLDLRHMKKDCLELLQRKVDDLSDTQNIAEDRTT
RTKTEYAVLQARYHMLEEQYRESELRAEERLAEEQKRHREILARVEREAS
LQNENCQMKIRATEIEATALREEAARLRVLCDKQANDLHRTEEQLELARD
QIGVLQQEHEEQAQALRRHEQEKKSTEELMLELGRELQRAREESGARAMP
TTSPESIRLEELHQELEEMRQKNRTLEEQNEELQATMLTNQATMLTNGVE
QGRHLLNGTLNSLAQELEEMSQAQLQQAFQEKEDENVRLKHYIDTILLNI
VENYPQLLEVKPMERKASFLDH
BO27574.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:26:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| nuf-PD | 316 | CG33991-PD | 1..316 | 1..316 | 1576 | 100 | Plus |
| nuf-PB | 305 | CG33991-PB | 1..305 | 12..316 | 1445 | 96.1 | Plus |
| nuf-PA | 502 | CG33991-PA | 198..502 | 12..316 | 1445 | 96.1 | Plus |
| nuf-PC | 502 | CG33991-PC | 198..502 | 12..316 | 1445 | 96.1 | Plus |
| nuf-PM | 318 | CG33991-PM | 1..318 | 12..316 | 1421 | 92.1 | Plus |
