BO27575.complete Sequence
640 bp assembled on 2010-08-18
GenBank Submission: KX796788
> BO27575.complete
GAAGTTATCAGTCGACATGTCGAACAGATTGTTGGAATCCCTTATCTACT
GGCGCGATGTGAAGAAATCCGGCATTGTCTTCGGCGCTGGCCTGATCACA
CTGGCGGCCATCTCCAGCTTCTCGGTGATCAGCGTGTTCGCCTACTTGTC
GCTCCTAACCCTCTTCGGCACCGTCGCCTTCAGAATCTACAAATCTGTGA
CACAGGCCGTGCAAAAGACAAACGAGGGTCACCCCTTTAAGGATTACCTG
GAGCTGGATCTGACGCTGTCGCACGAAAAGGTACAGAACATTGCCGGCGT
GGCTGTGGCACATATCAATGGCTTCATCTCCGAGCTGAGGCGTCTGTTTC
TTGTTGAGGATATCATCGATTCGATCAAGTTCGGCGTCATTCTGTGGGTC
TTCACCTACGTGGGTGCCTGGTTCAATGGCATGACTCTGGTCATCTTGGC
CTTTGTCTCGCTGTTTACCTTGCCCAAGGTCTACGAGAACAACAAGCAAT
CGATCGACACTCACTTGGATCTGGTGCGCAGCAAATTGACAGAAATCACC
GACAAGATCCGAGTGGCCATCCCCATTGGCAACAAGAAGCCCGAGGCCGC
TGCCGAGTCTGAGAAGGACAAGGCAAGCTTTCTAGACCAT
BO27575.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:39:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rtnl1-RC | 609 | CG33113-PC | 1..606 | 17..622 | 3030 | 100 | Plus |
| Rtnl1-RF | 1788 | CG33113-PF | 1190..1785 | 27..622 | 2965 | 99.8 | Plus |
| Rtnl1-RG | 675 | CG33113-PG | 81..672 | 31..622 | 2960 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:39:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rtnl1-RC | 1267 | CG33113-RC | 92..697 | 17..622 | 3030 | 100 | Plus |
| Rtnl1-RF | 2700 | CG33113-RF | 1535..2130 | 27..622 | 2965 | 99.8 | Plus |
| Rtnl1-RG | 2271 | CG33113-RG | 277..868 | 31..622 | 2960 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:39:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 4994508..4994716 | 449..241 | 1045 | 100 | Minus |
| 2L | 23513712 | 2L | 4994786..4994994 | 241..33 | 1045 | 100 | Minus |
| 2L | 23513712 | 2L | 4994338..4994445 | 556..449 | 540 | 100 | Minus |
| 2L | 23513712 | 2L | 4994211..4994277 | 622..556 | 335 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 02:39:24 has no hits.
BO27575.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-18 15:55:22 Download gff for
BO27575.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rtnl1-RC | 68..673 | 17..624 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:19:02 Download gff for
BO27575.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rtnl1-RC | 92..697 | 17..624 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:15:52 Download gff for
BO27575.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rtnl1-RC | 92..697 | 17..624 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:15:52 Download gff for
BO27575.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 4994209..4994277 | 556..624 | 97 | <- | Minus |
| 2L | 4994339..4994444 | 450..555 | 100 | <- | Minus |
| 2L | 4994508..4994716 | 241..449 | 100 | <- | Minus |
| 2L | 4994787..4994994 | 33..240 | 100 | <- | Minus |
| 2L | 4995376..4995391 | 17..32 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:19:02 Download gff for
BO27575.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 4994209..4994277 | 556..624 | 97 | <- | Minus |
| arm_2L | 4994339..4994444 | 450..555 | 100 | <- | Minus |
| arm_2L | 4994508..4994716 | 241..449 | 100 | <- | Minus |
| arm_2L | 4994787..4994994 | 33..240 | 100 | <- | Minus |
| arm_2L | 4995376..4995391 | 17..32 | 100 | | Minus |
BO27575.pep Sequence
Translation from 16 to 640
> BO27575.pep
MSNRLLESLIYWRDVKKSGIVFGAGLITLAAISSFSVISVFAYLSLLTLF
GTVAFRIYKSVTQAVQKTNEGHPFKDYLELDLTLSHEKVQNIAGVAVAHI
NGFISELRRLFLVEDIIDSIKFGVILWVFTYVGAWFNGMTLVILAFVSLF
TLPKVYENNKQSIDTHLDLVRSKLTEITDKIRVAIPIGNKKPEAAAESEK
DKASFLDH
BO27575.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:14:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rtnl1-PC | 202 | CG33113-PC | 1..202 | 1..202 | 1008 | 100 | Plus |
| Rtnl1-PG | 224 | CG33113-PG | 23..224 | 1..202 | 985 | 97.5 | Plus |
| Rtnl1-PD | 224 | CG33113-PD | 23..224 | 1..202 | 985 | 97.5 | Plus |
| Rtnl1-PL | 222 | CG33113-PL | 26..222 | 6..202 | 982 | 99.5 | Plus |
| Rtnl1-PA | 222 | CG33113-PA | 26..222 | 6..202 | 981 | 99.5 | Plus |
