BO27576.complete Sequence
2743 bp assembled on 2010-09-13
GenBank Submission: KX797230
> BO27576.complete
GAAGTTATCAGTCGACATGGCAACTGTGGCGCCCGCTGTAAAAGCCGCGA
GCAAGGTGCTCCAGAATCTGGGATTCCGGCTGCCCAAACAGATTAAGCCA
AGCAAGTACCGCCTTCATTTGCGCCCCGATCTCGAACGAAAGAACTATTC
CGGCAATATAAGCATCAGCCTGCAAGTACTGGAGCCCATAGCCTTCATCC
CAGTCCATGTGAAGCAACTGAATGTGAGCACCGTTGAGGTGAAGCGCCTG
GATGAATCTGGAGCGCCGCTTAAGGACATCACCCCCACGCTGACCTTTGC
CCATCCGGAGTTTGAGTACTGGGTGACCGAGTTCGAACAGCCGCTGGAGG
CGGGAAACTACTCACTGCTGCTCAACTTTACGGGATCGCTTGTAGATCGG
ATTACGGGGATGTACCAGAGCTCCTACTTGGATAAGCTGAAAAACCGCTC
CAGATCAATCATTTCCACAAAGTTTGAGCCCACTTATGCCCGCCAAGCAT
TCCCCTGCTTCGATGAGCCCGCCCTTAAGGCTCAGTTCACCATAACGGTG
GCCCGTCCAAGTGGTGATGAGTACCATGTGCTGTCCAACATGCCAGTGGC
CAGCGAGTATGTCGATGGCGATATCACCGAGGTGACTTTCGCGGAGACCG
TACCCATGAGCACCTATCTGGCCGCCTTTGTGGTGTCTGATTTTCAATAC
AAGGAAACCACTGTGGAGGGAACCAGCATCGCTCTGAAAGTCTATGCGCC
ACCAGCGCAGGTGGAGAAAACCCAGTACGCCCTGGACACTGCGGCCGGAG
TGATGGCCTACTACATCAACTATTTCAATGTTTCGTATGCCCTACCCAAA
TTGGATCTGGTTGCCATACCCGATTTCGTGTCCGGTGCTATGGAAAACTG
GGGATTGGTCACGTTCCGGGAGACGGCTCTTCTGTACGACGAATCTACCA
GTTCCAGCGTGAATAAGCAGCGTGTGGCCATCGTCGTGGCCCATGAGTTG
GCTCACCAGTGGTTCGGAAACCTGGTAACCATGAACTGGTGGAACGATTT
GTGGCTAAACGAGGGTTTCGCATCATTCCTTGAGTACAAGGGAGTAAAGC
AAATGCATCCGGAATGGGATATGGACAATCAGTTTGTTATTGAGGAACTG
CACCCGGTGCTGACCATTGATGCCACCTTAGCCTCCCATCCGATTGTCAA
GTCCATTGAGAGTCCAGCCGAGATCACGGAGTACTTCGATACCATCACCT
ATTCAAAGGGAGCCGCCTTAGTACGCATGCTTGAGAATCTGGTGGGCGAG
GAAAAGTTGAGGAACGCCACCACCCGCTATTTGGTGCGTCATATCTACAG
TACTGCCACCACCGAGGATTACCTCACCGCAGTCGAGGAGGAGGAGGGCC
TGGAATTTGACGTGAAGCAGATCATGCAGACCTGGACGGAGCAGATGGGT
CTTCCGGTTGTGGAGGTGGAGAAAAGTGGCAGTACTTATAAGCTCACCCA
AAAGCGTTTCCTGGCCAACGAAGATGACTACGCAGCCGAAGCTGAAGCAT
CGTCCTTCAACTACCGTTGGTCGATTCCCATTACCTACACGAGCAGCATC
AACAGTGAAGTCCAATCACTAATATTCAACCACAATGACAATGAGGCCAC
CATAACGCTTCCGGAAGAGGCCAGCTGGATTAAGATTAACACGAATCAAG
TGGGCTACTACCGGGTGAACTACGGCAGCGAACAGTGGGCGGAACTCATA
TCGGCCCTGAAGAACTCCCGGGAAACCTTCAGCACCGCCGATCGCGCTCA
TCTGCTGAACGATGCCAATACCCTGGCCGCTGCCGGACAGCTTAACTACT
CCGTGGCACTGGATCTGATATCTTACCTGGAGAGCGAGCAGGACTACGTG
CCCTGGAGCGTAGGCACCTCCGCCCTGGCTACGTTAAGGAACCGCGTATA
CTACACGGACTTGTACACTAATTACACCACCTACGCCCGTAAACTGCTTA
CGCCCATCGTAGAAAAGGTCACGTTTACCGTGGCAGCCGATCATCTGGAA
AATCGCCTCCGTATTAAGGTGCTGAGCTCAGCCTGCAGCTTGGGACATGA
GAGCTCCTTGCAACAGGCGGTCACGCTCTTCAACCAGTGGCTAGCCAGCC
CCGAGACCCGGCCCAATCCGGATATCCGAGACGTTGTCTACTACTATGGT
CTGCAACAGGTGAACACAGAGGCTGCCTGGGATCAAGTTTGGAAGCTGTA
TCTGGACGAGAGTGATGCCCAGGAAAAGCTGAAGTTGATGAACTGCCTAA
CCGCCGTGCAGGTGCCATGGCTGTTGCAGCGTTACATCAACTGGGCCTGG
GATGAGAGCAATGTCCGCCGCCAGGACTACTTCACCCTGCTTGGATATAT
ATCCACCAATCCGGTGGGTCAGAGTCTTGTGTGGGATTACGTGCGTGAAA
ACTGGGAGAAGTTGGTGGATCGTTTCGGCATCAATGAACGCACCTTGGGT
CGTCTGATCCCCACGATCACTGCCCGCTTCTCAACAGAAACCAAGCTGGA
AGAGATGCAGCAGTTCTTTGCCAAATATCCCGAGGCTGGAGCCGGAACTG
CGGCCCGTCAACAGGCGTTGGAAGCGGTGAAGGCAAACATCAAATGGCTA
GCGGCCAACAAGGCCCAGGTGGGCGAATGGTTGGCCAATTACGTTCAACA
GTCCAGCGTCACCAACCGCATTCAGGCAAGCTTTCTAGACCAT
BO27576.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 05:04:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32473-RB | 2712 | CG32473-PB | 1..2709 | 17..2725 | 13545 | 100 | Plus |
CG32473-RC | 3078 | CG32473-PC | 367..3075 | 17..2725 | 13545 | 100 | Plus |
CG32473-RA | 3039 | CG32473-PA | 763..3036 | 452..2725 | 11370 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:04:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32473-RB | 3002 | CG32473-RB | 134..2842 | 17..2725 | 13545 | 100 | Plus |
CG32473-RC | 3635 | CG32473-RC | 767..3475 | 17..2725 | 13545 | 100 | Plus |
CG32473-RA | 3273 | CG32473-RA | 840..3113 | 452..2725 | 11370 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 05:04:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 13310143..13311109 | 451..1417 | 4835 | 100 | Plus |
3R | 32079331 | 3R | 13311953..13312625 | 2053..2725 | 3365 | 100 | Plus |
3R | 32079331 | 3R | 13311404..13311895 | 1561..2052 | 2460 | 100 | Plus |
3R | 32079331 | 3R | 13309519..13309955 | 17..453 | 2185 | 100 | Plus |
3R | 32079331 | 3R | 13311174..13311317 | 1417..1560 | 720 | 100 | Plus |
3R | 32079331 | 3R | 13313341..13313573 | 1050..1293 | 595 | 84.8 | Plus |
3R | 32079331 | 3R | 13313710..13313973 | 1561..1842 | 545 | 81.2 | Plus |
3R | 32079331 | 3R | 29247180..29247288 | 1071..963 | 320 | 86.2 | Minus |
3R | 32079331 | 3R | 13300347..13300431 | 987..1071 | 305 | 90.6 | Plus |
3R | 32079331 | 3R | 13297841..13298076 | 2372..2607 | 280 | 74.6 | Plus |
3R | 32079331 | 3R | 13295918..13296098 | 845..1025 | 245 | 75.7 | Plus |
3R | 32079331 | 3R | 29242633..29242712 | 1071..992 | 220 | 85 | Minus |
3R | 32079331 | 3R | 29236928..29237007 | 1065..986 | 205 | 83.8 | Minus |
3R | 32079331 | 3R | 29143469..29143569 | 965..1065 | 190 | 79.2 | Plus |
Blast to na_te.dros performed on 2014-11-28 05:04:37 has no hits.
BO27576.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-09-16 10:43:38 Download gff for
BO27576.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32473-RB | 134..2842 | 17..2727 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:25:15 Download gff for
BO27576.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32473-RC | 767..3475 | 17..2727 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 06:03:41 Download gff for
BO27576.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32473-RC | 767..3475 | 17..2727 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 06:03:41 Download gff for
BO27576.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 13309519..13309955 | 17..453 | 100 | -> | Plus |
3R | 13310146..13311108 | 454..1416 | 100 | -> | Plus |
3R | 13311174..13311317 | 1417..1560 | 100 | -> | Plus |
3R | 13311404..13311895 | 1561..2052 | 100 | -> | Plus |
3R | 13311953..13312625 | 2053..2727 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:25:15 Download gff for
BO27576.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 9135241..9135677 | 17..453 | 100 | -> | Plus |
arm_3R | 9135868..9136830 | 454..1416 | 100 | -> | Plus |
arm_3R | 9136896..9137039 | 1417..1560 | 100 | -> | Plus |
arm_3R | 9137126..9137617 | 1561..2052 | 100 | -> | Plus |
arm_3R | 9137675..9138347 | 2053..2727 | 99 | | Plus |
BO27576.pep Sequence
Translation from 16 to 2743
> BO27576.pep
MATVAPAVKAASKVLQNLGFRLPKQIKPSKYRLHLRPDLERKNYSGNISI
SLQVLEPIAFIPVHVKQLNVSTVEVKRLDESGAPLKDITPTLTFAHPEFE
YWVTEFEQPLEAGNYSLLLNFTGSLVDRITGMYQSSYLDKLKNRSRSIIS
TKFEPTYARQAFPCFDEPALKAQFTITVARPSGDEYHVLSNMPVASEYVD
GDITEVTFAETVPMSTYLAAFVVSDFQYKETTVEGTSIALKVYAPPAQVE
KTQYALDTAAGVMAYYINYFNVSYALPKLDLVAIPDFVSGAMENWGLVTF
RETALLYDESTSSSVNKQRVAIVVAHELAHQWFGNLVTMNWWNDLWLNEG
FASFLEYKGVKQMHPEWDMDNQFVIEELHPVLTIDATLASHPIVKSIESP
AEITEYFDTITYSKGAALVRMLENLVGEEKLRNATTRYLVRHIYSTATTE
DYLTAVEEEEGLEFDVKQIMQTWTEQMGLPVVEVEKSGSTYKLTQKRFLA
NEDDYAAEAEASSFNYRWSIPITYTSSINSEVQSLIFNHNDNEATITLPE
EASWIKINTNQVGYYRVNYGSEQWAELISALKNSRETFSTADRAHLLNDA
NTLAAAGQLNYSVALDLISYLESEQDYVPWSVGTSALATLRNRVYYTDLY
TNYTTYARKLLTPIVEKVTFTVAADHLENRLRIKVLSSACSLGHESSLQQ
AVTLFNQWLASPETRPNPDIRDVVYYYGLQQVNTEAAWDQVWKLYLDESD
AQEKLKLMNCLTAVQVPWLLQRYINWAWDESNVRRQDYFTLLGYISTNPV
GQSLVWDYVRENWEKLVDRFGINERTLGRLIPTITARFSTETKLEEMQQF
FAKYPEAGAGTAARQQALEAVKANIKWLAANKAQVGEWLANYVQQSSVTN
RIQASFLDH
BO27576.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-26 14:28:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32473-PB | 903 | CG32473-PB | 1..903 | 1..903 | 4675 | 100 | Plus |
CG32473-PC | 1025 | CG32473-PC | 123..1025 | 1..903 | 4675 | 100 | Plus |
CG32473-PA | 1012 | CG32473-PA | 130..1012 | 16..903 | 4014 | 88.7 | Plus |
CG8773-PB | 994 | CG8773-PB | 117..989 | 16..889 | 2581 | 56.4 | Plus |
CG8774-PB | 885 | CG8774-PB | 9..885 | 20..902 | 2158 | 47.6 | Plus |