BO27577.complete Sequence
2038 bp assembled on 2010-09-13
GenBank Submission: KX797622
> BO27577.complete
GAAGTTATCAGTCGACATGAACTATGACGGCCTCCTTTCCAAGTTGACCG
ACGAAAAACTGATGCTCTTCGAAGCCGCCGGCGAGGGGACCATTGTAGAG
GGTAGCCGGATATGCGGCCAGGATGCGGATCCGCTCTCCTTGCCGCTGGT
GGAGGACGGCGCCATCGAGGAGGAGCAGGCGGCCCCCATACAGACGATTC
ATCGCACTGTATTCGCCGTTCCACGCGTCCCTTCCCCCTCCCCCGTAAGC
ACATCAGGTGCCAATCTGAACCTCAAGACGGAAAACGCTGCGACAGCGAC
TCCGCAGCGCAAAATATCGACGTCATCACGTTTCATGAACGCCTTCAGTC
AGCTCTACGGCGGCGGCAACAGCGGTCCGAGCTGCGGTCACGTGGAGCAG
CACAACGAGGAACCCGGTGACCTGTCGGCAAACCGTACTCCCACCAAGGG
CATGGAGTCCAAGCTCGTCGCAATGTGGCACAATGTGAAGTATGGCTGGA
GCGGCAAGATGAGGCAGACCAGCTTCTCAAAGGAGCAGCCCGTGTGGCTG
CTAGGACGGTGCTATCATCGACGCTTTACTCCGCCCGTAAGCATGGAAAG
TTCCATCACCGAGCTGCCCAGCGGGGCGGATACCACCCCCGATAACGCCA
CATCGGCGTTCGACAGCATTCAGGCCACATCGACATCAACCTCCTTGTAT
CCAGCCCTTAATCCGCAGCAGATCGATGAGATTGTGGTGCCCCAGGAACT
GGGAATGGACGCGGTGGAGAACCAAGTGGGCGAACAGCCTTGGGAGGAGG
GCATCGAAGGCTTTCGTCGTGACTTTTACAGTAGGATTTGGATGACCTAC
CGTCGAGAGTTCCCAATAATGAATGGCTCCAACTACACCTCGGACTGCGG
TTGGGGCTGTATGCTAAGGAGTGGTCAGATGCTCTTCGCTCAAGGACTCA
TCTGTCACTTCCTAGGGCGAAGCTGGCGCTATGATTCAGAGTCCCAGTTG
CACTCGACTTACGAGGACAATATGCATAAGAAGATCGTCAAGTGGTTCGG
GGACAGTTCCTCAAAAAGCAGTCCCTTCTCCATCCACGCCCTGGTGCGGC
TGGGGGAGCATTTGGGTAAAAAACCTGGCGATTGGTACGGTCCCGCCTCT
GTTTCCTATTTGCTTAAACACGCCTTAGAGCACGCGGCTCAGGAAAATGC
AGACTTTGACAATATTAGTGTCTATGTAGCCAAAGATTGCACGATTTACT
TGCAAGATATTGAGGATCAATGCAGCATTCCGGAACCGGCGCCAAAACCC
CATGTGCCTTGGCAACAAGCGAAGCGGCCGCAGGCGGAAACTACCAAAAC
GGAGCAACAACAGCACTGGAAGTCCCTCATCGTTCTGATACCTTTGCGCC
TGGGCAGTGATAAACTGAATCCTGTGTATGCCCATTGTCTGAAGCTGCTG
CTGAGTACAGAACACTGCCTGGGCATCCTTGGTGGAAAGCCAAAGCATTC
GCTGTACTTTGTCGGCTTCCAGGAGGACAGGCTCATCCACTTGGATCCGC
ACTATTGCCAGGAGATGGTGGATGTGAACCAAGAGAACTTCTCCCTGCAC
TCGTTTCACTGCAAGTCGCCGCGGAAGCTTAAGGCCAGCAAAATGGATCC
TAGTTGTTGTATCGGCTTTTACTGTGCCACCAAAAGTGATTTCGACAATT
TTATGGAGAGCGTACAGTTGTATTTGCATCCTATGCGTTGCGCCTCAGGG
GCAACTGTGGATAAGGCGGCCGGGAGCCATCATACGACGCCTCAGTCATC
CCATCAAACCGAGCAAACAGAGATGAACTATCCATTGTTCTCATTTTCCC
GCGGTCGTTGCATGGATCACGAGCGGGACGAAATGAGCGATTCGCTGTAC
AAGCCGCTCATAAAACAGGTGGCTTCTCTGGCCCAGGAATTGGGCGCTCA
ACTGGCGCCGCCACAGCACGGCGATGAGCACGACCAAGATGATAGTGAAA
GCGAAGAGTTTGTGCTGCTGGCAAGCTTTCTAGACCAT
BO27577.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 05:08:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Atg4b-RA | 2007 | CG6194-PA | 1..2004 | 17..2020 | 10020 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:08:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Atg4b-RA | 2665 | CG6194-RA | 109..2112 | 17..2020 | 10020 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 05:08:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 15355673..15356628 | 972..17 | 4780 | 100 | Minus |
| 3R | 32079331 | 3R | 15354633..15355108 | 1720..1245 | 2380 | 100 | Minus |
| 3R | 32079331 | 3R | 15354273..15354573 | 2020..1720 | 1505 | 100 | Minus |
| 3R | 32079331 | 3R | 15355420..15355615 | 1167..972 | 980 | 100 | Minus |
| 3R | 32079331 | 3R | 15355276..15355352 | 1244..1168 | 385 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 05:08:33 has no hits.
BO27577.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-09-16 10:43:40 Download gff for
BO27577.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6194-RA | 104..2107 | 17..2022 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:25:25 Download gff for
BO27577.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6194-RA | 109..2112 | 17..2022 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 06:04:54 Download gff for
BO27577.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Atg4b-RA | 109..2112 | 17..2022 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 06:04:54 Download gff for
BO27577.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 15354271..15354572 | 1721..2022 | 99 | <- | Minus |
| 3R | 15354633..15355108 | 1245..1720 | 100 | <- | Minus |
| 3R | 15355276..15355352 | 1168..1244 | 100 | <- | Minus |
| 3R | 15355420..15355615 | 972..1167 | 100 | <- | Minus |
| 3R | 15355674..15356628 | 17..971 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:25:25 Download gff for
BO27577.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 11179993..11180294 | 1721..2022 | 99 | <- | Minus |
| arm_3R | 11180355..11180830 | 1245..1720 | 100 | <- | Minus |
| arm_3R | 11180998..11181074 | 1168..1244 | 100 | <- | Minus |
| arm_3R | 11181142..11181337 | 972..1167 | 100 | <- | Minus |
| arm_3R | 11181396..11182350 | 17..971 | 100 | | Minus |
BO27577.pep Sequence
Translation from 16 to 2038
> BO27577.pep
MNYDGLLSKLTDEKLMLFEAAGEGTIVEGSRICGQDADPLSLPLVEDGAI
EEEQAAPIQTIHRTVFAVPRVPSPSPVSTSGANLNLKTENAATATPQRKI
STSSRFMNAFSQLYGGGNSGPSCGHVEQHNEEPGDLSANRTPTKGMESKL
VAMWHNVKYGWSGKMRQTSFSKEQPVWLLGRCYHRRFTPPVSMESSITEL
PSGADTTPDNATSAFDSIQATSTSTSLYPALNPQQIDEIVVPQELGMDAV
ENQVGEQPWEEGIEGFRRDFYSRIWMTYRREFPIMNGSNYTSDCGWGCML
RSGQMLFAQGLICHFLGRSWRYDSESQLHSTYEDNMHKKIVKWFGDSSSK
SSPFSIHALVRLGEHLGKKPGDWYGPASVSYLLKHALEHAAQENADFDNI
SVYVAKDCTIYLQDIEDQCSIPEPAPKPHVPWQQAKRPQAETTKTEQQQH
WKSLIVLIPLRLGSDKLNPVYAHCLKLLLSTEHCLGILGGKPKHSLYFVG
FQEDRLIHLDPHYCQEMVDVNQENFSLHSFHCKSPRKLKASKMDPSCCIG
FYCATKSDFDNFMESVQLYLHPMRCASGATVDKAAGSHHTTPQSSHQTEQ
TEMNYPLFSFSRGRCMDHERDEMSDSLYKPLIKQVASLAQELGAQLAPPQ
HGDEHDQDDSESEEFVLLASFLDH
BO27577.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-26 14:28:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Atg4b-PA | 668 | CG6194-PA | 1..668 | 1..668 | 3590 | 100 | Plus |
| Atg4a-PB | 410 | CG4428-PB | 63..333 | 263..567 | 452 | 32.9 | Plus |
| Atg4a-PA | 411 | CG4428-PA | 63..333 | 263..567 | 452 | 32.9 | Plus |
